Chromosome II	TE	Positions	Strand	Identity (%)
6002791-6002973	ATHPOGON3	528-712	d	0.86
6008141-6009881	HELITRON2	9690-11435	c	0.97
6009882-6015826	HELITRON2	3590-9617	c	0.97
6015880-6017471	HELITRON2	1946-3536	c	0.96
6017472-6017650	HELITRONY2	1688-1864	c	0.95
6017651-6019230	HELITRON2	186-1765	c	0.95
6019235-6019337	HELITRON2	1-97	c	0.82
6019451-6024350	VANDAL7	226-5145	d	0.98
6024351-6024584	VANDAL7	5146-5410	d	0.99
6024585-6025486	VANDAL7	5447-6350	d	0.98
6025487-6025550	VANDAL7	6304-6368	d	0.97
6025551-6027849	VANDAL7	6369-8750	d	0.97
6027851-6027868	VANDAL7	9133-9150	d	1.00
6027883-6027994	VANDAL7	9151-9250	d	0.92
6027995-6030490	VANDAL7	9251-11750	d	0.98
6030491-6030834	VANDAL7	11814-12157	d	0.98
6030835-6030896	VANDAL7	12289-12350	d	0.98
6032643-6032900	ATREP3	1-256	d	0.92
6032952-6033453	ATHATN7	1-579	c	0.81
6036171-6036286	ATREP4	1-118	c	0.91
6043793-6044358	ATGP6I	2753-3319	d	0.66
6044359-6044648	ATGP5I	3551-3840	d	0.64
6044670-6045322	ATGP5I	3862-4511	d	0.66
6045339-6045612	ATGP5I	4528-4801	d	0.69
6047106-6047166	HELITRONY1C	2512-2571	d	0.74
6048083-6048250	ATREP3	1-171	d	0.96
6048251-6048787	ATREP3	269-809	d	0.95
6048788-6049572	ATREP3	1308-2094	c	0.96
6049579-6049769	ATREP3	960-1151	c	0.95
6049770-6049819	ATREP3	953-1002	c	0.92
6049820-6049909	ATREP3	19-109	c	0.93
6049910-6050073	ATREP3	791-953	d	0.92
6050354-6050932	ATHATN7	1-574	c	0.82
6054254-6054948	ATLANTYS1_I	3087-3781	c	0.70
6054953-6055045	ATLANTYS2_I	2667-2759	c	0.62
6055059-6055190	ATLANTYS1_I	2845-2976	c	0.65
6064467-6065038	ATLANTYS1_I	3078-3649	d	0.71
6065266-6065672	ATLANTYS2_I	3554-3960	d	0.68
6075228-6075613	ATHILA4A_I	1190-1574	c	0.83
6075646-6075702	ATHILA4A_I	1101-1157	c	0.74
6076228-6076504	ATHILA4D_LTR	649-915	c	0.73
6076505-6077147	ATHILA4_LTR	15-657	c	0.79
6077367-6079468	AT9MU1	1-2102	d	1.00
6083891-6084339	ATLINEIII	1616-2066	d	0.70
6085170-6085814	ATLINEIII	3002-3646	d	0.67
6086090-6086702	ATLINEIII	3922-4534	d	0.65
6087540-6087621	ATLINE1_3A	245-330	d	0.79
6088064-6089140	ATDNAI27T9B	1002-2090	c	0.94
6089141-6089557	ATDNAI27T9B	749-1158	c	0.92
6089558-6089663	ATDNAI27T9B	894-999	c	0.87
6094412-6094543	ATSINE3	24-163	d	0.93
6096194-6096571	HELITRON4	16613-16975	c	0.75
6097102-6110582	HELITRON1	1-13489	d	0.98
6111637-6111873	HELITRON1	15370-15611	d	0.91
6111892-6112132	HELITRON1	15564-15809	d	0.94
6114926-6115104	HELITRON4	3-182	c	0.80
6117693-6118205	ARNOLDY1	59-643	d	0.80
6118799-6119268	ARNOLDY1	1451-1936	d	0.84
6121106-6121237	ATSINE3	25-165	c	0.92
6125515-6125762	ATHILA4B_LTR	1-249	d	0.92
6125763-6126049	ATHILA4B_LTR	251-550	d	0.91
6126050-6126081	ATHILA4B_LTR	551-582	d	1.00
6126082-6126649	ATHILA4A_LTR	551-1120	d	0.87
6126650-6126708	ATHILA4B_LTR	1153-1209	d	0.91
6128379-6128630	ATHILA4_LTR	1-251	d	0.86
6128669-6129289	ATHILA4D_LTR	348-949	d	0.79
6129290-6129505	ATHILA4D_LTR	949-1165	d	0.77
6142781-6142899	ATCOPIA40_I	3713-3832	d	0.79
6142901-6143198	ATCOPIA65A_I	14-311	d	0.81
6143199-6143471	ATCOPIA64LTR	1-275	d	0.76
6154290-6155000	ATREP5	171-887	d	0.90
6155015-6155115	ATREP1	417-525	c	0.70
6155148-6155702	ATREP2	1-564	c	0.95
6155703-6155877	ATREP5	1337-1510	c	0.88
6165410-6165574	ATTIRX1A	2-167	d	0.90
6177398-6177877	VANDAL9	555-1031	d	0.67
6178952-6179405	VANDAL12	2277-2750	d	0.71
6179407-6179817	VANDAL12	2752-3162	d	0.72
6179983-6180635	VANDAL11	3253-3950	d	0.68
6181459-6181631	VANDAL11	12977-13149	d	0.69
6181632-6182129	VANDAL11	13180-13681	d	0.72
6185119-6185226	HELITRONY1B	1035-1140	d	0.74
6186419-6187039	ATCOPIA28_I	3391-4009	d	0.82
6197179-6197745	ATREP8	468-1036	c	0.93
6197819-6198145	ATREP10A	527-863	c	0.94
6198210-6198250	ATREP8	444-484	c	0.90
6198251-6198670	ATREP8	23-443	c	0.92
6198671-6198891	ATREP8	1-223	c	0.94
6199999-6200567	ATLINE1A	906-1471	d	0.76
6201202-6201436	ATENSPM1	3631-3864	c	0.75
6201589-6201825	ATLINE1A	1465-1701	d	0.86
6201850-6202250	ATLINE1A	1765-2193	d	0.83
6202253-6202307	ATLINE1A	2196-2251	d	0.75
6204252-6204647	ATHILA4A_LTR	1-409	d	0.87
6204651-6205056	ATHILA4D_LTR	475-878	d	0.90
6211831-6212994	ATGP1LTR	1-1160	c	0.98
6212995-6213880	ATGP1I	5090-5977	c	0.98
6213881-6217195	ATGP1I	1728-5042	c	0.99
6217196-6217457	ATGP1I	1428-1727	c	0.98
6217477-6218492	ATGP1I	1-1015	c	0.98
6218493-6219650	ATGP1LTR	2-1160	c	0.98
6220450-6220663	HELITRONY1A	913-1121	d	0.84
6236747-6237388	ATREP13	1-619	c	0.94
6245759-6246539	ATREP10D	1-777	c	0.96
6255258-6255950	ATIS112A	4151-4842	d	0.83
6255951-6256233	ATIS112A	4843-5150	d	0.76
6256234-6256372	ATIS112A	5152-5291	d	0.72
6264874-6265115	ATREPX1	1004-1249	d	0.76
6267420-6267550	ATREPX1	2287-2434	c	0.93
6267551-6269827	ATREPX1	1-2286	c	0.91
6277007-6277101	ATREP4	396-490	c	0.80
6277162-6277401	ATREP4	166-402	c	0.81
6278193-6278420	VANDAL2	15026-15253	c	0.96
6278479-6285250	VANDAL2	8163-14959	c	0.98
6285251-6287741	VANDAL2	5806-8306	c	0.98
6287742-6293503	VANDAL2	1-5770	c	0.98
6331931-6332450	ATREP3	258-947	c	0.95
6332452-6332605	ATREP3	1-159	c	0.94
6350984-6351345	ATLINE1_4	6341-6698	d	0.79
6354237-6354529	ATLINE1A	1953-2247	d	0.80
6358003-6358535	SIMPLEGUY1	275-816	c	0.75
6358573-6358671	SIMPLEGUY1	121-219	c	0.77
6358727-6358792	SIMPLEGUY1	1-66	c	0.79
6359001-6359064	HELITRONY2	6273-6337	d	0.80
6359702-6360703	ATREP11A	1-1003	d	0.96
6362983-6363290	ATLINE1A	1939-2252	c	0.81
6363872-6364012	ATSINE3	21-161	d	0.93
6364100-6365848	ATREP15	1-1752	c	0.97
6366157-6366577	ATHPOGON2	272-689	d	0.83
6370782-6371164	ATCOPIA9LTR	1-383	c	1.00
6371165-6375464	ATCOPIA9I	1-4300	c	1.00
6375465-6375847	ATCOPIA9LTR	1-383	c	0.99
6378222-6378649	ARNOLDY1	1-494	d	0.84
6378650-6378763	ARNOLDY1	537-650	d	0.93
6378782-6378947	ARNOLDY2	275-443	d	0.72
6378949-6379013	ARNOLDY1	690-753	d	0.88
6379023-6379277	ARNOLDY1	1362-1621	d	0.86
6390169-6391389	ATHILA7LTR	178-1427	c	0.93
6391392-6391539	ATHILA7LTR	1-154	c	0.93
6393133-6393648	ATHILA4D_LTR	660-1165	c	0.68
6394342-6394681	ATHILA4C_I	8186-8552	c	0.68
6395351-6398829	ATHAT7	22-3500	d	1.00
6407317-6407637	ATENSPM7	7050-7360	c	0.71
6407694-6407809	ATENSPM3	6907-7025	c	0.72
6407951-6408457	ATENSPM7	6197-6714	c	0.70
6408853-6409535	ATENSPM3	5412-6088	c	0.71
6410155-6410719	ATENSPM3	4341-4904	c	0.73
6410769-6411065	ATENSPM3	4010-4306	c	0.70
6411070-6411200	ATENSPM3	3876-4006	c	0.79
6411202-6411266	ATENSPM7	3713-3777	c	0.82
6411267-6411910	ATENSPM3	3063-3706	c	0.78
6412002-6412148	ATENSPM7	2745-2885	c	0.80
6412151-6412483	ATENSPM7	2410-2742	c	0.79
6412484-6413450	ATENSPM3	1558-2506	c	0.79
6413451-6413804	ATENSPM7	1082-1418	c	0.75
6417648-6417998	ATREP4	1-349	d	0.91
6418019-6418343	ATREP4	1913-2240	d	0.93
6419853-6420099	DT1	22-262	d	0.86
6432195-6432513	ATCOPIA78LTR	1-382	d	0.82
6433880-6434128	DT1	6-251	d	0.88
6457423-6457850	ATGP2NLTR	1-428	d	0.98
6457851-6459472	ATGP2NLTR	398-2033	d	0.96
6461591-6461682	ATHPOGON1	1-92	d	0.88
6461687-6461884	ATHPOGON1	65-262	d	0.91
6461937-6462208	ATHPOGON1	263-538	d	0.81
6462290-6462713	ATLINE1_1	5413-5851	c	0.68
6463309-6463477	ATHILA5_LTR	1377-1566	c	0.71
6463481-6463658	ATHILA5_LTR	1211-1373	c	0.72
6463679-6463750	ATHILA5_LTR	1143-1210	c	0.72
6463751-6464211	ATHILA5_LTR	674-1142	c	0.90
6464212-6464287	ATHILA5_LTR	609-673	c	0.79
6464306-6464448	ATHILA5_LTR	462-608	c	0.66
6464732-6464932	ATHILA5_LTR	1-202	c	0.77
6471435-6471597	ATREP5	761-931	c	0.73
6471602-6472088	ATREP5	137-633	c	0.85
6472808-6473626	ATENSPM10	7444-8271	c	0.94
6473634-6475613	ATENSPM10	5407-7400	c	0.94
6475614-6476750	ATHILA4_LTR	2-1143	c	0.91
6476751-6477245	ATENSPM10	4923-5478	c	0.92
6477251-6480950	ATENSPM10	1184-4917	c	0.96
6480990-6481150	ATENSPM10	972-1118	c	0.92
6481151-6481627	ATENSPM10	455-934	c	0.94
6487905-6488162	ATTIRTA1	1-265	c	0.90
6497836-6498248	TAT1_ATH	396-851	d	0.83
6498251-6499048	TAT1_ATH	854-1690	d	0.79
6500001-6500383	ATLANTYS2_I	2911-3293	d	0.70
6500394-6500633	ATLANTYS2_I	3334-3570	d	0.64
6502925-6502997	TAT1_ATH	1699-1775	d	0.87
6503067-6503220	TAT1_ATH	1951-2101	d	0.70
6503728-6504176	TAT1_ATH	2267-2716	d	0.73
6506321-6506760	TAT1_ATH	3502-3941	d	0.69
6509226-6509541	ATHILA7_I	9217-9547	c	0.85
6514760-6514935	ARNOLD4	8282-8459	c	0.95
6514951-6515014	ARNOLD2	15153-15216	c	0.91
6515015-6515272	ARNOLD3	14200-14474	c	0.95
6515273-6515297	ARNOLD2	14916-14940	c	1.00
6515298-6516172	ARNOLD3	13300-14174	c	0.99
6516173-6517345	ARNOLD2	12884-14040	c	0.98
6517346-6517411	ARNOLD3	12072-12136	c	0.98
6517412-6518350	ARNOLD2	11879-12817	c	0.99
6518351-6518895	ARNOLD3	10587-11130	c	0.90
6518896-6520150	ARNOLD1	10410-11665	c	0.99
6520151-6520205	ARNOLD3	9275-9329	c	1.00
6520206-6521050	ARNOLD2	9163-10029	c	0.90
6521051-6521177	ARNOLD1	8099-8225	c	0.98
6521178-6521606	ARNOLD1	4101-4529	c	0.97
6521607-6524050	ARNOLD2	2596-5040	c	1.00
6524051-6524950	ARNOLD1	1668-2567	c	0.98
6524951-6525194	ARNOLD2	1455-1698	c	1.00
6525195-6526450	ARNOLD1	210-1465	c	0.98
6526451-6526565	ARNOLD4	77-193	c	0.94
6527345-6528125	ARNOLDY1	1151-1936	c	0.95
6528867-6529012	ATHAT1	3054-3203	c	0.70
6529071-6529608	ATHAT1	2518-3057	c	0.75
6529654-6529810	ATHAT1	2309-2460	c	0.67
6529822-6530350	ATHAT1	1770-2298	c	0.81
6531907-6532149	ARNOLDY1	1074-1315	c	0.91
6532150-6532412	ARNOLDY1	936-1231	c	0.87
6532413-6532452	ARNOLDY1	694-734	c	0.93
6532468-6532655	ARNOLDY1	517-693	c	0.87
6532656-6532684	ARNOLDY1	463-491	c	0.93
6532685-6533199	ARNOLDY1	1-516	c	0.94
6540922-6542171	ARNOLD2	14241-15490	c	1.00
6542172-6542250	ARNOLD3	13734-13813	c	0.86
6542251-6542277	ARNOLD2	14135-14161	c	1.00
6542278-6542371	ARNOLD3	13143-13236	c	0.89
6542372-6542550	ARNOLD2	13862-14040	c	1.00
6542551-6542671	ARNOLD1	14081-14201	c	1.00
6542672-6543528	ARNOLD2	12884-13740	c	1.00
6546372-6546443	ARNOLD2	9862-10040	c	0.66
6546444-6546504	ARNOLD3	9278-9339	c	0.73
6543608-6546809	ARNOLD2	9603-12804	c	0.97
6546810-6547450	ARNOLD1	8026-8665	c	0.96
6547472-6547710	ARNOLD2	8702-8940	c	1.00
6547711-6547771	ARNOLD1	7705-7765	c	0.97
6547772-6548008	ARNOLD2	8404-8640	c	1.00
6548009-6548650	ARNOLD1	6823-7465	c	0.98
6548651-6549319	ARNOLD2	7093-7761	c	1.00
6549389-6549550	ARNOLD1	5922-6082	c	0.96
6549551-6550007	ARNOLD2	6405-6861	c	1.00
6550075-6550106	ARNOLD2	6306-6337	c	1.00
6550107-6550409	ARNOLD4	6385-6686	c	0.97
6550444-6550474	ARNOLD2	5712-5742	c	0.97
6550475-6550650	ARNOLD1	4825-4998	c	0.97
6550651-6550701	ARNOLD2	5484-5534	c	0.94
6550702-6551071	ARNOLD3	5388-5757	c	0.97
6551072-6551282	ARNOLD2	5131-5340	c	0.99
6551283-6551950	ARNOLD3	4507-5174	c	0.98
6551951-6552450	ARNOLD2	3963-4462	c	0.99
6552451-6554609	ARNOLD3	1775-3933	c	0.99
6554610-6554850	ARNOLD2	1563-1803	c	1.00
6554851-6554952	ARNOLD4	1629-1730	c	0.97
6554953-6555550	ARNOLD3	946-1542	c	0.98
6555573-6555750	ARNOLD2	663-840	c	1.00
6555751-6556403	ARNOLD4	10-662	c	0.98
6571571-6572010	ATLINE1_5	4212-4651	c	0.64
6575781-6576102	ATREP5	1439-1751	c	0.76
6577824-6578066	ATREP13	399-648	c	0.85
6578068-6578424	ATREP13	1-397	c	0.87
6597001-6597056	ATGP8LTR	873-929	d	0.84
6597090-6597486	ATGP8LTR	930-1339	d	0.74
6597501-6597615	ATGP8LTR	1377-1489	d	0.70
6606760-6607015	ATREP14	464-737	d	0.90
6607484-6607678	ARNOLDY1	1742-1936	c	0.92
6607684-6608347	ARNOLDY1	987-1685	c	0.93
6608348-6608650	ARNOLDY1	1053-1385	c	0.92
6608651-6608682	ARNOLDY1	1336-1367	c	0.97
6608687-6608850	ARNOLDY1	629-785	c	0.85
6608851-6609275	ARNOLDY1	221-628	c	0.90
6609291-6609519	ARNOLDY1	1-220	c	0.90
6609660-6609776	ATREP3	947-1063	d	0.91
6609777-6610401	ARNOLDY1	1-582	d	0.91
6610131-6610172	ARNOLDY1	311-352	d	1.00
6610402-6610650	ARNOLDY1	855-1127	d	0.81
6610651-6611220	ARNOLDY1	969-1550	d	0.94
6611221-6611350	ARNOLDY1	1551-1695	d	0.87
6611351-6611545	ARNOLDY1	1648-1850	d	0.94
6611548-6611631	ARNOLDY1	1853-1936	d	0.94
6611632-6612672	ATREP3	1055-2097	d	0.97
6616688-6616818	ATSINE1	1-146	d	0.82
6622668-6623292	ATREP8	1-637	d	0.75
6623867-6624019	ATREP7	111-267	c	0.83
6627004-6629380	ATREP5	1-2386	c	0.99
6629391-6629533	ATREP5	668-809	c	0.66
6629876-6629960	ATREP3	1305-1392	d	0.74
6630201-6630290	ATREP3	1361-1451	d	0.73
6630292-6630736	ATREP3	1453-1909	d	0.80
6630751-6631372	ATREP7	26-650	d	0.91
6631373-6631450	ATREP7	651-735	d	0.91
6631451-6631664	ATREP7	736-940	d	0.74
6633937-6633994	ATLINE1A	2202-2254	c	0.78
6634008-6634088	ATLINE1A	2120-2201	c	0.85
6640051-6640950	VANDALNX2	581-1473	d	0.89
6645470-6645848	HELITRONY1B	239-612	d	0.83
6645849-6646009	HELITRONY1B	611-778	d	0.66
6646023-6646112	HELITRONY1B	779-857	d	0.75
6663416-6663599	SIMPLEHAT2	1025-1208	c	0.93
6663859-6664076	SIMPLEHAT2	800-1027	c	0.96
6664077-6664738	SIMPLEHAT2	1-658	c	0.95
6665325-6665402	ARNOLDY2	1097-1174	c	0.67
6665403-6665440	ARNOLDY1	105-142	d	0.89
6665441-6665633	ARNOLDY1	1571-1768	c	0.68
6665651-6665850	ARNOLDY1	1737-1936	c	0.90
6668921-6669782	ATLANTYS1_I	3006-3867	d	0.73
6669783-6670146	ATLANTYS2_I	3605-3964	d	0.67
6671082-6671332	ATLANTYS2_I	4774-5024	d	0.68
6671361-6671941	ATLANTYS2_I	5053-5633	d	0.67
6677332-6677630	ARNOLDY1	987-1284	c	0.97
6677631-6677949	ARNOLDY1	958-1301	c	0.87
6677950-6678626	ARNOLDY1	1-676	c	0.88
6678627-6678850	ARNOLDY2	397-623	c	0.68
6679986-6680250	ATSINE4	1-265	c	0.91
6681605-6681769	SIMPLEHAT2	1-165	d	0.96
6694909-6694950	ATHATN7	557-598	c	0.86
6694951-6695534	ATHATN7	1-577	c	0.83
6698371-6698545	ATHATN7	376-546	c	0.77
6698551-6698927	ATHATN7	1-369	c	0.88
6701766-6702323	ATHATN7	1-546	c	0.84
6714991-6715076	TA11	5889-5976	c	0.82
6715097-6715231	TA11	5734-5869	c	0.69
6715232-6715632	TA11	5327-5725	c	0.75
6715693-6717860	TA11	3098-5266	c	0.76
6717947-6720799	TA11	228-3097	c	0.77
6720905-6721074	TA11	4-174	c	0.76
6727421-6734120	ATLINE1_4	1-6700	c	1.00
6739064-6739552	BOMZH2	1-488	c	0.79
6747976-6748380	ATHATN1	16-415	d	0.79
6751975-6752950	ATREP3	1122-2095	d	0.96
6767558-6767830	ATCOPIA36_LTR	1-273	d	1.00
6767851-6772010	ATCOPIA36_I	21-4180	d	1.00
6772011-6772282	ATCOPIA36_LTR	1-273	d	0.99
6785851-6786285	ATCOPIA37_LTR	12-436	d	0.95
6786286-6791435	ATCOPIA37_I	1-5150	d	1.00
6791442-6791877	ATCOPIA37_LTR	1-436	d	1.00
6801219-6803587	ATREP5	1-2386	c	0.98
6807591-6807912	BOMZH1	10-334	c	0.77
6809399-6809707	SIMPLEHAT2	851-1208	d	0.95
6812694-6812726	HELITRONY1C	2521-2553	d	0.88
6825913-6826131	DT1	4-240	c	0.81
6830355-6830711	ATMU2	569-930	d	0.69
6830974-6831150	ATMU2	1205-1384	d	0.67
6831151-6831216	ATMU1	1536-1601	d	0.83
6831217-6832148	ATMU2	1451-2384	d	0.78
6832150-6832373	ATMU1	2535-2750	d	0.75
6832383-6832587	ATMU1	2760-2964	d	0.72
6832657-6833150	ATMU1	3043-3540	d	0.73
6835109-6835362	ATMU2	3095-3338	d	0.73
6835371-6835571	ATMU2	3372-3550	d	0.73
6835651-6836098	ATMU2	3622-4132	d	0.74
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6840767-6841027	VANDAL18NA	1-261	d	0.92
6841028-6841381	VANDAL18NA	294-647	d	0.97
6841420-6841735	VANDAL18NA	913-1261	d	0.92
6849751-6849943	ATREP1	8-200	d	0.95
6849947-6850450	ATREP1	324-865	d	0.92
6858307-6858477	ATCOPIA38_LTR	1-171	c	0.94
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6862968-6863138	ATCOPIA38_LTR	1-171	c	1.00
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6871844-6873928	ATREP3	1-2097	c	0.97
6884321-6884491	ATCOPIA38_LTR	1-171	d	0.93
6884492-6888952	ATCOPIA38B_I	1-4490	d	0.94
6888953-6889123	ATCOPIA38_LTR	1-171	d	0.92
6893861-6894271	ATLINE1_2	5403-5814	c	0.74
6902581-6902728	ATCOPIA38B_LTR	1-162	d	0.99
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6907208-6907369	ATCOPIA38B_LTR	1-162	d	1.00
6910315-6910667	ATLINEIII	5051-5408	c	0.65
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6943186-6943370	BRODYAGA1	999-1184	c	0.70
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6943982-6944317	BRODYAGA1	815-1184	d	0.76
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6962234-6966210	VANDAL1	8891-12864	d	0.98
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6970849-6971011	HELITRONY1B	1-164	d	0.72
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6971554-6971650	HELITRONY1A	531-628	d	0.76
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6981064-6981250	ATLINE1A	2054-2250	c	0.78