Chromosome II	TE	Positions	Strand	Identity (%)
1009605-1009729	VANDAL3	16537-16666	c	0.61
1009748-1010035	VANDAL3	16255-16536	c	0.84
1010917-1011048	VANDAL3	985-1116	c	0.79
1011052-1011201	VANDAL3	816-981	c	0.73
1011203-1011750	VANDAL3	267-814	c	0.96
1011751-1011876	VANDAL3	117-266	c	0.98
1011877-1011990	VANDAL3	1-116	c	0.94
1016579-1016814	ATSINE4	107-340	d	0.82
1023608-1023659	ATHILA4C_I	5585-5637	d	0.81
1037046-1037908	ATREP1	1-888	c	0.95
1047325-1047750	ATREP8	648-1077	c	0.87
1047751-1047938	ATREP8	472-647	c	0.84
1047955-1047998	ATREP8	428-471	c	0.86
1047999-1048403	ATREP8	1-427	c	0.86
1072741-1073244	ATLINEIII	4534-5037	d	0.65
1074836-1075083	ATREP13	397-648	c	0.88
1075085-1075402	ATREP13	1-395	c	0.93
1077557-1077813	ATTIRX1A	124-382	c	0.95
1077822-1078019	ATLINE1A	2056-2254	d	0.87
1078020-1078164	ATTIRX1A	1-145	c	0.95
1078165-1078315	ATTIR16T3A	247-408	c	0.91
1078316-1078493	ATTIRX1A	52-252	c	0.70
1078497-1078551	ATTIR16T3A	1-55	c	0.84
1083939-1084192	ATREP10C	275-536	d	0.80
1084928-1085200	LIMPET1	1343-1637	c	0.92
1085201-1085525	LIMPET1	1220-1543	c	0.90
1085528-1085584	LIMPET1	1360-1417	c	0.81
1086688-1087124	ATREP10B	167-628	d	0.79
1087939-1088339	ATREP10B	108-514	d	0.80
1088388-1088450	ATREP10C	1-63	d	0.95
1088451-1088959	ATREP10C	64-650	d	0.95
1088969-1089133	ATREP10C	9-174	d	0.72
1125465-1125656	ATREP8	884-1076	c	0.94
1125674-1125968	ATREP8	528-827	c	0.89
1125969-1126486	ATREP8	1-527	c	0.87
1141489-1141751	DT1	1-262	c	0.87
1169319-1169489	ATSINE1	1-174	d	0.81
1175989-1176085	ATCOPIA24I	4025-4121	d	0.81
1176091-1176668	ATCOPIA17I	4454-5034	d	0.74
1198314-1198577	HELITRON4	4742-5011	c	0.83
1198614-1199250	HELITRON4	4074-4709	c	0.86
1199251-1199550	HELITRON4	3745-4073	c	0.81
1199552-1199717	HELITRON3	5395-5558	c	0.72
1199741-1199850	HELITRON4	3453-3561	c	0.76
1206576-1206649	ARNOLD2	2-75	d	0.96
1206651-1207163	ARNOLD3	76-588	d	0.97
1207164-1207614	ARNOLD2	15040-15490	d	0.96
1209652-1209950	ATDNA2T9A	281-581	d	0.68
1209951-1210010	VANDALNX2	835-893	c	0.77
1210026-1210294	VANDALNX2	566-834	c	0.79
1210310-1210768	ATDNA2T9B	1010-1472	d	0.97
1215313-1215678	ATTIRX1B	1-373	c	0.83
1222161-1222518	ATTIRX1B	2-373	c	0.84
1225203-1226565	ATHILA7LTR	1-1427	d	0.92
1229532-1230109	ATLINEIII	1518-2084	d	0.67
1240372-1240650	ARNOLDY2	1-280	d	0.92
1240674-1240901	ARNOLDY1	316-529	d	0.88
1240902-1241518	ARNOLDY2	551-1175	d	0.86
1241519-1241969	ATREP3	1650-2097	d	0.79
1243651-1244250	ATHILA4A_LTR	556-1152	d	0.73
1253149-1253471	ATLINE1_3A	2-330	d	0.65
1257323-1257732	ATIS112A	4644-5057	d	0.72
1262001-1262494	ATTIR16T3A	2-494	d	0.93
1263717-1264527	VANDAL21	7420-8244	c	0.96
1264598-1266042	VANDAL21	5909-7349	c	0.99
1266066-1268096	VANDAL21	3262-5294	c	0.95
1268097-1269741	VANDAL21	1184-2830	c	0.98
1269742-1270646	VANDAL21	240-1144	c	0.99
1270647-1270675	VANDAL21	199-229	c	0.97
1270720-1270835	VANDAL21	1-116	c	0.97
1279865-1280517	ATREP13	1-647	c	0.93
1286243-1286842	ATHPOGON3	1-627	d	0.89
1287664-1287908	ATHATN9	1-246	c	0.91
1292561-1293450	ATLINE1A	1350-2251	c	0.86
1296906-1296950	ATENSPM9	1251-1295	c	0.82
1296951-1297506	ATENSPM6	482-1069	c	0.83
1297507-1297950	ATHILA_I	1312-1759	d	0.78
1297988-1298129	ATHILA4B_LTR	1-142	d	0.84
1298155-1298204	ATHILA4B_LTR	220-270	d	0.88
1298205-1298318	ATHILA4A_LTR	273-382	d	0.79
1298319-1298456	ATHILA4B_LTR	373-514	d	0.76
1298457-1298521	ATHILA4A_LTR	482-550	d	0.77
1298522-1299146	ATHILA4A_LTR	551-1178	d	0.80
1299158-1299491	ATHILA6B_I	1774-2106	d	0.74
1299848-1299984	ATGP8LTR	1377-1509	c	0.69
1299999-1300343	ATGP8LTR	969-1339	c	0.70
1300368-1300403	ATGP8LTR	932-968	c	0.76
1300421-1300485	ATGP8LTR	873-931	c	0.82
1301354-1301422	ATREP11	965-1053	c	0.84
1301451-1301942	ATREP11	279-777	c	0.86
1302012-1302108	ATREP11	1-100	c	0.80
1302613-1302986	ATHILA_LTR	1153-1537	d	0.82
1310249-1310710	ATTIR16T3A	7-501	d	0.94
1313069-1313287	ATCOPIA29_LTR	1-184	d	0.88
1313288-1313566	META1_I	1-289	d	0.89
1320967-1321851	ATREP1	1-888	c	0.92
1325813-1328970	ATENSPM7	1-3177	d	0.97
1328971-1329528	ATENSPM7	7972-8535	d	0.97
1332051-1332091	ATSINE3	4-44	c	0.90
1346209-1347071	ATREP1	1-888	c	0.94
1350951-1351475	ATCOPIA41LTR	34-556	c	0.82
1352346-1352625	ATSINE4	1-300	c	0.89
1358965-1359065	ATCOPIA59LTR	53-150	d	0.82
1366472-1367497	ATREP11	1-1053	c	0.94
1369784-1370165	SIMPLEHAT2	828-1208	c	0.96
1370166-1370822	SIMPLEHAT2	1-658	c	0.93
1371541-1371648	ATHILA4B_LTR	558-667	c	0.91
1371651-1371814	ATHILA4B_LTR	391-555	c	0.81
1371835-1372193	ATHILA4B_LTR	1-357	c	0.87
1372196-1372560	ATLINE1A	1889-2252	d	0.68
1379152-1379539	ATLINE1A	1836-2253	d	0.66
1379614-1380290	ATN9_1	1-678	c	0.98
1382550-1383409	ATREP1	1-888	c	0.94
1387828-1388009	ATCOPIA28_LTR	1-182	c	0.98
1388010-1392715	ATCOPIA28_I	1-4706	c	1.00
1392716-1392897	ATCOPIA28_LTR	1-182	c	1.00
1394256-1394417	META1_LTR	1-162	d	0.99
1394418-1396498	META1_I	1-2103	d	0.97
1396499-1398350	META1_I	2962-4821	d	0.99
1398351-1398512	META1_LTR	1-162	d	0.97
1402898-1403164	ATN9_1	1-271	d	0.78
1403175-1403560	ATN9_1	251-636	d	0.76
1408583-1409149	ATREP2	1-564	d	0.90
1411402-1412293	ATGP1LTR	1-894	d	0.91
1412348-1412406	ATGP1LTR	892-950	d	0.93
1412407-1412550	ATGP1LTR	951-1086	d	0.88
1412551-1412618	ATGP1LTR	1087-1160	d	0.94
1412818-1413400	ATHPOGON2	42-691	c	0.90
1413401-1413438	ATHPOGON2	4-41	c	0.89
1415804-1415869	ATLINE1_3A	261-329	d	0.94
1421118-1421475	ATLINE1_5	2761-3123	d	0.68
1422265-1424422	ATLINE1A	77-2254	d	0.81
1429973-1430163	ATREP7	621-811	d	0.86
1435169-1435250	ATENSPM9	6861-6937	d	0.81
1435251-1435873	ATENSPM9	6938-7550	d	0.73
1435874-1435943	ATENSPM6	7430-7499	d	0.71
1435947-1436145	ATENSPM9	7624-7824	d	0.67
1440890-1441949	ATREP8	1-1077	d	0.91
1443054-1443258	ATN9_1	428-638	c	0.82
1443261-1443686	ATN9_1	2-425	c	0.86
1458209-1458750	ATHATN7	1-537	d	0.82
1458751-1458817	ATHATN7	538-598	d	0.84
1459073-1459769	ATREP3	248-947	c	0.95
1459770-1459919	ATREP3	1-151	c	0.96
1460261-1460483	ATMU10	4480-4703	c	0.82
1500001-1500177	ATIS112A	4737-4913	c	0.85
1504380-1508237	VANDAL21	1-3860	d	0.98
1508283-1509093	VANDAL21	3936-4747	d	0.99
1509094-1511121	VANDAL21	4859-6891	d	0.97
1511122-1511178	VANDAL21	6696-6752	d	0.93
1511179-1511677	VANDAL21	6851-7349	d	0.99
1511748-1512545	VANDAL21	7420-8244	d	0.95
1535258-1535701	ATHATN1	5-498	d	0.88
1544819-1545011	ATMU3N1	194-386	c	0.98
1545022-1545527	SIMPLEHAT2	690-1208	d	0.94
1545528-1545867	HELITRONY1C	2373-2732	c	0.83
1546656-1547643	ATCOPIA95_I	1-985	c	0.91
1547644-1548047	ATCOPIA95LTR	437-841	c	0.89
1548085-1548332	ATCOPIA95LTR	197-446	c	0.80
1548333-1548511	ATCOPIA95LTR	1-191	c	0.92
1548512-1551028	ATCOPIA95_I	2611-5139	c	0.93
1551029-1551298	ATREP14	464-735	c	0.90
1551398-1551856	ATREP14	1-463	c	0.93
1551857-1552068	ATCOPIA95_I	2417-2612	c	0.95
1552069-1552621	ATCOPIA95_I	1233-1814	c	0.93
1555518-1555746	DT1	1-231	c	0.80
1556065-1556247	ATCOPIA61LTR	1-183	c	1.00
1556248-1560900	ATCOPIA61_I	1-4653	c	1.00
1560901-1561051	ATCOPIA61LTR	1-183	c	0.96
1563982-1564542	ATHILA4D_LTR	605-1165	c	0.69
1569101-1569335	ATTIRTA1	1-265	c	0.95
1571512-1571666	ATSINE3	1-156	d	0.84
1571744-1572278	ATHPOGON1	1-538	c	0.88
1572319-1572409	ATHPOGON1	1-91	c	0.92
1578044-1578367	HELITRONY1C	2735-3058	d	0.86
1579848-1580251	ATMUN1	579-1000	d	0.80
1583868-1584350	TAG3N1	1-486	d	0.84
1584351-1584489	TAG3N1	479-635	d	0.87
1584504-1584594	TAG3N1	664-754	d	0.88
1586371-1586637	ATLINE1A	1986-2254	d	0.83
1591946-1592206	DT1	1-262	d	0.86
1593006-1593214	ATLINE1A	2047-2254	d	0.78
1595951-1596473	ATREP2	37-564	d	0.93
1596657-1596768	ATREP1	417-532	d	0.73
1598995-1599250	ATLINE1_4	5887-6144	c	0.64
1599274-1599792	ATLINE1_5	5463-5985	c	0.68
1599846-1599936	ATSINE1	81-171	d	0.82
1606032-1606221	ATCOPIA43I	520-709	c	0.68
1606238-1606732	ATCOPIA43I	2-503	c	0.69
1607273-1607384	ATGP6LTR	222-333	c	0.83
1607772-1607860	ATGP6LTR	497-576	c	0.76
1608112-1608223	ATGP6LTR	222-333	c	0.85
1613233-1614273	META1_I	851-1905	d	0.95
1614579-1616705	META1_I	1899-4016	d	0.96
1616737-1616798	META1_I	4760-4821	d	0.98
1616799-1616960	META1_LTR	1-162	d	0.98
1619452-1619873	ATHATN3A	159-589	c	0.94
1619874-1619950	ATHATN7	27-104	d	0.95
1619951-1620427	ATHATN7	105-587	d	0.94
1620442-1620648	ATHATN3A	1-207	c	0.89
1628427-1628532	ATLINE1A	2148-2254	d	0.75
1628651-1629780	ATGP1LTR	1-1147	c	0.98
1629781-1633928	ATGP1I	1830-5977	c	0.99
1633931-1635330	ATGP1I	1-1431	c	0.98
1635331-1636475	ATGP1LTR	1-1160	c	0.98
1648680-1650744	ATHAT3	2132-4184	c	0.96
1650745-1650884	ATHAT3	2-141	c	0.92
1651278-1651721	ATMU3N1	2-446	c	0.98
1652397-1652770	ATMUNX1	1-377	c	0.78
1662874-1662989	ATREP10C	523-633	c	0.75
1663002-1663521	ATREP10C	4-522	c	0.86
1668786-1669327	ATREP2	1-564	c	0.94
1669451-1670387	ATENSPM9	12-950	d	0.97
1670397-1670431	ATENSPM9	7462-7496	d	0.97
1670432-1671751	ATENSPM9	7891-9233	d	0.97
1675329-1675487	ATLINE1A	2076-2251	c	0.86
1677617-1678011	ATREP10A	466-864	c	0.89
1679997-1680350	ATHPOGON2	308-691	c	0.84
1681212-1681461	ATHPOGON3	1-291	c	0.82
1690159-1690465	ATREP7	1-308	d	0.87
1690468-1690561	ATREP7	294-384	d	0.90
1690584-1691145	ATREP7	385-940	d	0.87
1692579-1693719	ATCOPIA21I	3362-4502	c	0.73
1693753-1694267	ATCOPIA21I	1539-2075	c	0.76
1700483-1700787	ATHATN3	242-554	c	0.83
1700795-1700928	ATLINE1A	2120-2254	d	0.89
1700929-1701183	ATHATN3	1-264	c	0.87
1708578-1708795	ATLINE1A	2035-2252	c	0.85
1715606-1715847	ATDNATA1	1-241	c	0.92
1715885-1716255	ATMUNX1	4-374	c	0.77
1726854-1727271	ATCOPIA41LTR	196-608	c	0.84
1730639-1731026	ARNOLDY1	1485-1936	c	0.83
1734784-1735015	ATREP1	1-228	c	0.81
1740432-1740950	ARNOLD4	1-521	d	0.98
1740951-1741080	ARNOLD3	521-650	d	0.98
1741081-1741150	ARNOLD2	736-805	d	1.00
1741151-1741805	ARNOLD3	889-1542	d	0.98
1741806-1741850	ARNOLD2	1461-1505	d	0.96
1741851-1741885	ARNOLD4	1674-1708	d	0.91
1741886-1742050	ARNOLD3	1510-1673	d	0.96
1742051-1742089	ARNOLD1	1675-1713	d	1.00
1742090-1742119	ARNOLD2	1786-1815	d	0.93
1742128-1742398	ARNOLD3	1751-2021	d	0.98
1742399-1742691	ARNOLD2	2051-2343	d	1.00
1742692-1744550	ARNOLD4	2651-4508	d	0.98
1744551-1744788	ARNOLD2	4203-4440	d	0.97
1744789-1745418	ARNOLD4	4821-5450	d	0.97
1745419-1745450	ARNOLD2	5071-5102	d	0.91
1745451-1745723	ARNOLD4	5483-5750	d	0.96
1745724-1746050	ARNOLD3	5416-5742	d	0.98
1746051-1746623	ARNOLD4	6078-6650	d	0.98
1746624-1747198	ARNOLD2	6270-6843	d	0.96
1747199-1747497	ARNOLD2	6552-6850	d	0.95
1747498-1750450	ARNOLD2	6851-9797	d	0.93
1750451-1750503	ARNOLD3	9044-9096	d	0.98
1750504-1750750	ARNOLD2	9851-10097	d	0.98
1750751-1751078	ARNOLD3	9343-9670	d	0.98
1751079-1753250	ARNOLD1	10751-12950	d	0.96
1753251-1753453	ARNOLD2	12617-12817	d	1.00
1753454-1753519	ARNOLD3	12072-12136	d	0.97
1753520-1754097	ARNOLD1	13218-13795	d	0.99
1754098-1754605	ARNOLD3	12753-13250	d	0.99
1754606-1754723	ARNOLD1	14333-14450	d	0.97
1754724-1755647	ARNOLD2	14110-15037	d	0.98
1755648-1755672	ARNOLD2	15026-15050	d	1.00
1755673-1755895	ARNOLD1	15381-15603	d	0.98
1755896-1756077	ARNOLD2	15309-15490	d	0.96
1757545-1757649	VANDAL6	8260-8359	c	0.80
1757652-1758064	VANDAL6	7841-8257	c	0.86
1758065-1758250	VANDAL6	7664-7840	c	0.83
1758252-1758375	VANDAL6	7541-7662	c	0.92
1758376-1758633	VANDAL6	7241-7540	c	0.74
1758634-1760158	VANDAL6	5714-7240	c	0.96
1760237-1760637	VANDAL6	5255-5656	c	0.90
1760651-1760696	VANDAL6	4776-4821	c	0.89
1760697-1761400	VANDAL6	4158-4828	c	0.93
1761421-1761542	VANDAL6	4015-4146	c	0.90
1761698-1765250	VANDAL6	298-3838	c	0.94
1765251-1765550	VANDAL6	7-297	c	0.87
1772714-1773250	VANDAL2	13571-14103	c	0.88
1773280-1773349	VANDAL2	15087-15155	c	0.83
1773435-1773571	VANDAL2	14822-14958	c	0.91
1773584-1773810	VANDAL2	14563-14821	c	0.87
1778257-1778397	ATDNAI27T9B	1-139	c	0.79
1781251-1781750	ATGP3I	347-846	d	0.76
1781874-1782027	ATGP3I	968-1120	d	0.75
1782061-1782604	ATGP3I	1163-1706	d	0.72
1782659-1785348	ATGP3I	1755-4443	d	0.74
1785353-1785494	ATGP3I	4448-4589	d	0.77
1785910-1786259	ATCOPIA57_I	1100-1467	c	0.87
1787085-1787346	ATCOPIA57LTR	1-241	c	0.74
1787915-1788185	ATREP14	464-737	c	0.91
1791490-1791569	ATREP6	1110-1189	c	0.73
1791586-1791950	ATREP6	748-1109	c	0.79
1795430-1795599	ATDNAI27T9B	897-1072	d	0.86
1796227-1796306	ATDNAI26T9	464-550	c	0.81
1796329-1796357	ATDNAI26T9	272-300	c	0.97
1796396-1796766	ATDNAI26T9	2-368	c	0.83
1800731-1800823	HARBINGER	5288-5377	c	0.98
1800824-1800903	HARBINGER	5194-5273	c	0.82
1800904-1801298	HARBINGER	4881-5280	c	0.90
1801999-1802047	HARBINGER	551-608	c	0.90
1802050-1802192	HARBINGER	537-667	c	0.84
1802194-1802384	HARBINGER	476-655	c	0.91
1802521-1802580	VANDAL6	3825-3880	c	0.78
1802609-1802759	HARBINGER	219-393	c	0.88
1802760-1802854	ATHPOGON3	1-97	d	0.85
1802880-1803010	ATHPOGON3	98-227	d	0.92
1803769-1803800	HELITRON4	16520-16551	c	0.91
1803012-1808943	HELITRON4	11367-17261	c	0.95
1808952-1812919	HELITRON4	7312-11248	c	0.88
1813026-1813179	HELITRON1	15264-15408	c	0.83
1813184-1814625	HELITRON1	13815-15259	c	0.91
1814626-1814747	HELITRON1	13731-13850	c	0.88
1814748-1816247	HELITRON4	3951-5434	c	0.85
1816261-1816523	HELITRON4	3715-3979	c	0.82
1816557-1816825	HELITRON4	3420-3681	c	0.80
1816857-1817044	HELITRON4	3198-3389	c	0.65
1817052-1819496	HELITRON4	724-3168	c	0.86
1819506-1819769	HELITRON4	452-714	c	0.88
1819785-1819956	HELITRON4	263-435	c	0.74
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