Chromosome II	TE	Positions	Strand	Identity (%)
9521-11820	ATGP1I	1830-4159	c	0.98
11823-12071	ATGP1I	1183-1431	c	0.98
12072-13189	ATGP2LTR	170-1287	c	0.97
13190-13250	ATGP2LTR	169-311	c	0.97
13251-13418	ATGP2LTR	1-169	c	0.49
13419-13450	ATGP2I	5019-5049	c	0.97
13451-15329	ATGP2I	3140-5018	c	0.98
16378-16407	ATGP2LTR	271-300	c	0.93
15330-16647	ATGP2LTR	1-1287	c	0.97
16648-21689	ATGP2I	3-5049	c	0.98
22708-22737	ATGP2LTR	241-270	c	0.97
21690-23007	ATGP2LTR	1-1287	c	0.97
23008-26150	ATGP2I	3-3144	c	0.98
26151-27030	ATGP2LTR	409-1287	c	0.97
27165-27950	ATGP2LTR	418-1203	c	0.97
27951-28030	ATGP2LTR	338-417	c	1.00
28031-28209	ATGP2LTR	167-337	c	0.89
28210-28427	ATGP2LTR	1-218	c	0.97
29516-29694	ATLANTYS1_I	2964-3142	d	0.62
29697-30225	ATLANTYS2_I	2822-3350	d	0.71
30227-30350	ATLANTYS1_I	3675-3798	d	0.67
30351-30484	ATLANTYS2_I	3476-3609	d	0.62
30487-32507	ATGP2NLTR	1-2033	d	0.98
32508-33050	ATGP2N_I	1-542	d	0.96
33051-33420	ATGP2N_I	798-1167	d	0.97
33421-35441	ATGP2NLTR	1-2033	d	0.98
35449-36050	ATLANTYS2_I	3614-4218	d	0.63
36396-36950	ATLANTYS2_I	4534-5088	d	0.61
36951-37246	ATLANTYS2_I	5089-5384	d	0.65
41164-42450	ATGP2LTR	1-1287	c	0.97
42451-47500	ATGP2I	3-5049	c	0.98
47501-48787	ATGP2LTR	1-1287	c	0.97
57682-61689	ATGP2I	1-4007	c	0.98
61690-62750	ATGP2LTR	226-1285	c	0.97
62751-63004	ATGP2LTR	2-255	c	0.97
63005-63950	ATGP1I	228-1188	c	0.98
63951-64075	ATGP1I	79-227	c	0.98
64076-66050	ATGP2NLTR	44-2033	c	0.98
66051-66094	ATGP2NLTR	1-43	c	0.89
66095-66177	ATGP1I	1-83	c	0.99
66178-66725	ATGP1LTR	584-1160	c	0.97
66726-67112	ATGP1LTR	1-483	c	0.97
68448-68897	ATLINE1_1	52-501	c	0.68
69056-69169	HELITRONY1B	975-1089	d	0.77
70652-70802	ATDNAI27T9C	613-761	c	0.86
70803-70870	LIMPET1	1343-1411	c	0.88
70871-71176	LIMPET1	1236-1543	c	0.86
125997-126350	HELITRONY1B	169-532	d	0.83
126351-126467	HELITRONY1B	533-650	d	0.81
126469-126542	HELITRONY1A	567-649	d	0.80
126569-126718	HELITRONY1B	693-842	d	0.81
126719-126950	HELITRONY1B	851-1101	d	0.86
126952-127151	HELITRONY1B	1103-1311	d	0.55
137793-138008	TSCL	980-1195	c	0.80
142303-142382	ATSINE1	9-93	d	0.86
151015-151231	ATMU1	1-216	d	0.75
151981-152197	ATMU1	1-216	c	0.73
160090-160326	ATREPX1	275-508	d	0.85
160339-160542	ATREPX1	509-736	d	0.79
160554-160596	ATREPX1	694-735	d	0.81
178752-179042	ATLINE1_5	6532-6818	d	0.75
191073-191449	ATHATN5	56-506	c	0.87
191451-191515	ATHATN5	1-54	c	0.87
202542-202795	ATTIRTA1	1-265	c	0.85
203538-203685	ATSINE3	17-165	c	0.87
225853-226053	DT1	58-261	d	0.84
236991-237047	ATLINE1A	1655-1717	d	0.78
237147-237645	ATLINE1A	1753-2252	d	0.82
239846-240051	ATREP10	1-206	d	0.95
240052-240650	ATREP10	12-625	d	0.90
240651-240884	ATREP10A	630-864	d	0.96
240885-240922	ATREP10	862-899	d	0.97
242803-248210	ATLINEIII	1-5408	c	1.00
253204-253543	ATSINE4	1-341	d	0.82
261388-261650	ATTIRTA1	1-260	d	0.77
274816-274984	ATSINE3	1-171	c	0.92
275794-276118	ATSINE4	12-341	c	0.84
286353-286546	ATDNA2T9B	1287-1472	c	0.85
287808-288064	ATTIRTA1	1-265	c	0.81
291732-292813	ATREP8	1-1077	d	0.89
304735-305043	ATSINE4	25-341	d	0.81
313626-314150	ATLINE1A	1731-2254	c	0.86
314151-314260	ATLINE1A	1606-1730	c	0.81
323051-323318	ATHATN4	103-437	d	0.86
339234-339541	ATGP2NLTR	1726-2033	c	0.83
345425-345528	HELITRONY1B	1021-1120	d	0.76
349316-349747	TSCL	748-1225	c	0.80
350671-351104	ATHATN4	1-437	c	0.86
359690-359855	ATENSPM6	5154-5320	c	0.68
367360-367591	ATLINE1A	2019-2252	d	0.79
378375-378535	ATSINE3	4-164	c	0.84
389842-390350	ATHATN3A	70-589	c	0.90
390351-390400	ATHATN3A	1-69	c	0.90
393587-395550	ATREP3	103-2095	c	0.97
399076-399241	ATSINE4	2-164	d	0.83
399243-399299	ATSINE4	285-340	d	0.91
421973-422146	ATSINE1	1-167	d	0.79
428197-428335	ATSINE3	1-171	d	0.77
439426-439594	ATSINE3	1-169	c	0.85
443938-444029	ATSINE4	241-341	d	0.91
448811-449253	ATHATN1	1-468	c	0.90
450060-450273	ATTIRX1B	143-367	d	0.85
498985-500000	ATREP3	1-1032	d	0.97
500001-500111	ATREP3	1033-1150	d	0.96
500112-501058	ATREP3	1151-2097	d	0.97
533326-533877	TA11	3227-3782	c	0.66
533879-533950	TA11	3154-3225	c	0.69
541309-542147	ATREP3	1-840	d	0.97
542148-542250	ATREP3	1080-1170	d	0.91
542251-543164	ATREP3	1171-2097	d	0.97
559180-559432	ATSINE4	89-340	c	0.82
565757-566550	ARNOLD1	1-794	d	1.00
566551-566606	ARNOLD3	867-922	d	0.98
566607-567469	ARNOLD1	851-1713	d	1.00
567470-567499	ARNOLD2	1786-1815	d	0.93
567507-569266	ARNOLD1	1751-3510	d	1.00
569267-569306	ARNOLD2	4451-4490	d	1.00
569307-571150	ARNOLD1	3551-5394	d	1.00
571225-571965	ARNOLD1	5469-6209	d	0.91
571966-572006	ARNOLD2	7151-7191	d	1.00
572007-574147	ARNOLD1	6251-8391	d	1.00
574222-578907	ARNOLD1	8466-13151	d	0.99
578908-578973	ARNOLD3	12072-12136	d	0.97
578974-580350	ARNOLD1	13218-14594	d	1.00
580351-580406	ARNOLD3	13512-13567	d	1.00
580407-581571	ARNOLD1	14651-15815	d	1.00
595350-595683	ATLINE1_3A	1-330	c	0.69
599854-599979	HELITRONY1B	1011-1150	d	0.71
602503-602585	ATSINE3	85-169	d	0.85
635879-636369	ATTIR16T3A	1-501	c	0.92
685437-686084	ATREP13	3-647	d	0.90
703299-703693	ATTIRX1A	1-379	c	0.90
706441-707838	ATREP3	1-1432	d	0.96
707839-708397	ATHATN6	3-594	d	0.98
708398-709069	ATREP3	1423-2096	d	0.96
712343-712787	ATMU3N1	2-446	c	0.96
714662-714750	ATREP6	1103-1189	c	0.91
714751-714894	ATREP6	940-1102	c	0.93
714895-715837	ATREP6	1-939	c	0.90
720903-721393	ATREP9	1-491	d	0.93
722125-722368	ATREP14	464-737	c	0.90
724858-725206	ATREPX1	2071-2434	c	0.93
725210-725846	ATREPX1	1019-1660	c	0.93
725970-726107	SIMPLEHAT2	783-920	d	0.83
726108-726450	ATREPX1	671-1018	c	0.89
726451-726678	ATREPX1	385-669	c	0.87
726679-727072	ATREPX1	1-384	c	0.88
742877-743094	DT1	1-214	d	0.82
748303-748558	ATTIRTA1	1-265	d	0.95
753357-753593	ATLINE1A	2021-2254	d	0.85
754082-754411	ATLINE1A	1919-2249	c	0.83
754625-754785	ATSINE3	1-161	d	0.84
761464-761601	ATSINE3	1-167	c	0.90
792478-792899	HELITRONY1A	1-435	c	0.85
793448-794634	ATREP6	3-1189	d	0.93
824443-824554	ATREP11A	1-114	d	0.88
824560-824646	HELITRON5	116-202	d	0.69
824660-824893	HELITRON5	213-460	d	0.74
825097-825271	ATREP2	394-564	d	0.91
870445-870526	ARNOLDY2	1098-1179	c	0.88
870543-870750	ARNOLDY2	877-1097	c	0.90
870751-870867	ARNOLDY2	697-812	c	0.89
870869-871450	ARNOLDY2	35-623	c	0.88
892848-893382	ATHATN5	5-541	c	0.91
908731-908893	META1_LTR	1-162	d	0.95
908894-910090	META1_I	1-1195	d	0.98
910091-910128	META1_I	1715-1750	d	0.97
910129-913150	META1_I	1751-4798	d	0.99
913174-913336	META1_LTR	1-162	d	0.98
913351-914291	ATMUN1	38-1000	d	0.97
918814-919005	ATDNATA1	52-241	c	0.95
920009-920338	ATHATN1	45-396	d	0.82
925129-925750	ATCOPIA56LTR	12-633	c	1.00
925762-925850	ATCOPIA56_I	4122-4210	c	1.00
925851-927148	ATCOPIA56_I	1722-3019	c	1.00
927149-928750	ATCOPIA56_I	7-1608	c	1.00
928757-928954	ATCOPIA56LTR	435-633	c	0.97
932514-932779	VANDAL22	1-265	c	0.91
978824-978856	ATREP3	2065-2097	c	0.94
978857-979050	ATREP3	1515-1700	c	0.79
979051-979466	ATREP3	947-1514	c	0.94
989827-989999	ATLINE1A	2078-2252	d	0.81
992229-992499	TSCL	930-1208	d	0.77
997619-998133	ATHATN5	1-541	d	0.88