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References to CENSOR

Pavlicek, A., Kohany, O., Jurka, J. Repeat mining: basic tools for detection and analysis. In Analytical tools for DNA, genes and genomes nuts and bolts. (Markoff, A., ed). DNA Press, Eagleville (2005).

Jurka, J., Kapitonov, V.V., Pavlicek, A., Klonowski, P., Kohany, O., Walichiewicz, J. (2005) Repbase Update, a database of eukaryotic repetitive elements. Cytogenetic and Genome Research 110:462-467 (description of new version of CENSOR)

Jurka, J. Repbase Update: a database and an electronic journal of repetitive elements. Trends Genet. 9:418-420(2000)

Jurka, J. (1998) Repeats in genomic DNA: mining and meaning. Curr. Opin. Struct. Biol. 8:333-337. (first description of Repbase)

Jurka, J., Klonowski, P., Dagman, V., Pelton, P. (1996) CENSOR - a program for identification and elimination of repetitive elements from DNA sequences. Computers and Chemistry Vol. 20 (No. 1): 119-122. (ftp://ftp.ncbi.nlm.nih.gov/repository/repbase/SOFTWARE/)

Jurka, J. Approaches to identification and analysis of interspersed repetitive DNA sequences. In Automated DNA Sequencing and Analysis (Adams, M.D., Fields, C. and Venter, J.C., eds), chapter 39, pp.294-298, Academic Press Inc., San Diego, CA (1994)

Jurka, J., Walichiewicz, J., Milosavljevic, A. (1992) Prototypic sequences for human repetitive DNA. J. Mol. Evol. 35: 286-291. (describes Pythia, CENSOR's predecessor)

Gish, W. (1996-2008) http://blast.wustl.edu

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