Repbase Reports

2023, Volume 23, Issue 6
June 16, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4113

SINE2-9c_Egr

SINE2-9c_Egr, a novel SINE retroposon from the Eucalyptus grandis genome.

Submitted:
05-Jun-2023
Accepted:
16-Jun-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-9c_Egr
Source:
Eucalyptus grandis
Organism:
Eucalyptus grandis
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from plant genomes.
Journal:
Repbase Reports 23(6), 4113-4113 (2023)
Abstract:
Analyzed genome: Eucalyptus grandis v2.0 (Phytozome). Consensus of 18 seqs; mean 83.77% identity to consensus. Additional features: tRNA-related region (1-82); A box (14-25); B box (58-68); tRNA-unrelated region (83-231); poly A tail (232-244). First 139 nt similar to SINE2-2_Egr and SINE2-7_Egr. SINE2-9_Egr variants a to d share 79.00% similarity.
Derived:
Download Sequence - Format:
IG, EMBL, FASTA
References:

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