Repbase Reports

2023, Volume 23, Issue 6
June 16, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4164

SINE2-8a_Spu

SINE2-8a_Spu, a novel SINE retroposon from the Salix purpurea genome.

Submitted:
05-Jun-2023
Accepted:
16-Jun-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-8a_Spu
Source:
Salix purpurea
Organism:
Salix purpurea
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from plant genomes.
Journal:
Repbase Reports 23(6), 4164-4164 (2023)
Abstract:
Analyzed genome: Salix purpurea v5.1 (Phytozome). Consensus of 50 seqs; mean 97.43% identity to consensus. Additional features: tRNA-related region (1-81); A box (14-24); B box (57-67); tRNA-unrelated region (82-185); poly A tail (186-199). SINE2-8_Spu variants a to c share 85.60% similarity. 76.30% similar to SaliS-IV.
Derived:
Download Sequence - Format:
IG, EMBL, FASTA
References:

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