Repbase Reports |
|---|
| 2023, Volume 23, Issue 6 |
| June 16, 2023 |
| Copyright © 2001-2023 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4292 |
SINE2-6_Pha |
|||
|---|---|---|---|
SINE2-6_Pha, a novel SINE retroposon from the Panicum hallii genome. |
|||
|
Submitted: 05-Jun-2023 |
Accepted: 16-Jun-2023 |
||
|
Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-6_Pha |
|||
|
Source: Panicum hallii |
Organism: Panicum hallii |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum |
|
| [] |
Authors: Grabiele,M. and Aguilera,P.M. |
||
|
Title: SINE retroposons from plant genomes. |
|||
|
Journal: Repbase Reports 23(6), 4292-4292 (2023) |
|||
Abstract: Analyzed genome: Panicum hallii v3.1 (Phytozome). Consensus of 50 seqs; mean 83.60% identity to consensus. Additional features: tRNA-related region (1-81); A box (13-24); B box (57-67); tRNA-unrelated region (82-308); poly A tail (309-316). Similar tRNA-unrelated region to SINE2-5_Pha. 98.10% similar to SINE2-1_PaM.
|
|||
|
Derived: |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||