Repbase Reports

2023, Volume 23, Issue 6
June 16, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4323

SINE2-5b_Cisi

SINE2-5b_Cisi, a novel SINE retroposon from the Citrus sinensis genome.

Submitted:
05-Jun-2023
Accepted:
16-Jun-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-5b_Cisi
Source:
Citrus sinensis
Organism:
Citrus sinensis
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from plant genomes.
Journal:
Repbase Reports 23(6), 4323-4323 (2023)
Abstract:
Analyzed genome: Citrus sinensis v1.1 (Phytozome). Consensus of 3 seqs; mean 97.00% identity to consensus. Additional features: tRNA-related region (1-92); A box (14-25); B box (68-78); tRNA-unrelated region (93-175); poly A tail (176-185). 13 or 26 nt TSDs. SINE2-5_Cisi variants a and b share 81.60% similarity.
Derived:
Download Sequence - Format:
IG, EMBL, FASTA
References:

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