Repbase Reports

2023, Volume 23, Issue 6
June 16, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4149

SINE2-4d_Pha

SINE2-4d_Pha, a novel SINE retroposon from the Panicum hallii genome.

Submitted:
05-Jun-2023
Accepted:
16-Jun-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-4d_Pha
Source:
Panicum hallii
Organism:
Panicum hallii
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from plant genomes.
Journal:
Repbase Reports 23(6), 4149-4149 (2023)
Abstract:
Analyzed genome: Panicum hallii v3.1 (Phytozome). Consensus of 15 seqs; mean 94.07% identity to consensus. Additional features: tRNA-related region (1-83); A box (14-25); B box (59-69); tRNA-unrelated region (84-275); poly T tail (173-178). SINE2-4_Pha variants a to d share 79.40% similarity.
Derived:
Download Sequence - Format:
IG, EMBL, FASTA
References:

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