Repbase Reports

2023, Volume 23, Issue 6
June 16, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4274

SINE2-3a_Pha

SINE2-3a_Pha, a novel SINE retroposon from the Panicum hallii genome.

Submitted:
05-Jun-2023
Accepted:
16-Jun-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-3a_Pha
Source:
Panicum hallii
Organism:
Panicum hallii
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from plant genomes.
Journal:
Repbase Reports 23(6), 4274-4274 (2023)
Abstract:
Analyzed genome: Panicum hallii v3.1 (Phytozome). Consensus of 20 seqs; mean 88.83% identity to consensus. Additional features: tRNA-related region (1-81); A box (13-23); B box (57-67); tRNA-unrelated region (82-172); poly T tail (173-178). Au family member. SINE2-3_Pha variants a to c share 74.10% similarity.
Derived:
Download Sequence - Format:
IG, EMBL, FASTA
References:

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