Repbase Reports

2023, Volume 23, Issue 6
June 16, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4137

SINE2-2b_Sre

SINE2-2b_Sre, a novel SINE retroposon from the Stevia rebaudiana genome.

Submitted:
05-Jun-2023
Accepted:
16-Jun-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-2b_Sre
Source:
Stevia rebaudiana
Organism:
Stevia rebaudiana
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Eupatorieae; Stevia
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from plant genomes.
Journal:
Repbase Reports 23(6), 4137-4137 (2023)
Abstract:
Analyzed genome: assembly of Xu et al. (2021) (NCBI BioProject PRJNA684944). Consensus of 36 seqs; mean 92.73% identity to consensus. Additional features: tRNA related region (1-91); A box (14-24); B box (67-77); tRNA-unrelated region (92-133); repeat ATACTAAC (94-101; 108-115; 116-122); poly A tail (134-142). Mainly differs from SINE2-2a_Sre by a copy of the repeat ATAACTAC at the tRNA-unrelated region. SINE2-2_Sre variants a to c share 81.40% similarity.
Derived:
Download Sequence - Format:
IG, EMBL, FASTA
References:

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