Repbase Reports

2023, Volume 23, Issue 6
June 16, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4271

SINE2-2a_Ppe

SINE2-2a_Ppe, a novel SINE retroposon from the Prunus persica genome.

Submitted:
05-Jun-2023
Accepted:
16-Jun-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-2a_Ppe
Source:
Prunus persica
Organism:
Prunus persica
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from plant genomes.
Journal:
Repbase Reports 23(6), 4271-4271 (2023)
Abstract:
Analyzed genome: Prunus persica v2.1 (Phytozome). Consensus of 50 seqs; mean 81.59% identity to consensus. Additional features: tRNA-related region (1-81); A box (13-23); B box (57-67); tRNA-unrelated region (82-124); poly A tail (125-136). SINE2-2_Ppe variants a to c share 68.90% similarity.
Derived:
Download Sequence - Format:
IG, EMBL, FASTA
References:

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