Repbase Reports

2023, Volume 23, Issue 6
June 16, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4170

SINE2-1_Sit

SINE2-1_Sit, a novel SINE retroposon from the Setaria italica genome.

Submitted:
05-Jun-2023
Accepted:
16-Jun-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-1_Sit
Source:
Setaria italica
Organism:
Setaria italica
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from plant genomes.
Journal:
Repbase Reports 23(6), 4170-4170 (2023)
Abstract:
Analyzed genome: Setaria italica v2.2 (Phytozome). Consensus of 50 seqs; mean 88.32% identity to consensus. Additional features: tRNA-related region (1-81); A box (13-24); B box (57-67); tRNA-unrelated region (82-309); poly A tail (310-317). 95.57% similar to SINE2-1_PaM.
Derived:
Download Sequence - Format:
IG, EMBL, FASTA
References:

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