Repbase Reports

2023, Volume 23, Issue 4
April 27, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 2294

Helitron-3_Ipa

Helitron-3_Ipa, a novel transposon from the Ilex paraguariensis genome.

Submitted:
08-Apr-2023
Accepted:
27-Apr-2023
Key Words:
Helitron; DNA transposon; Transposable Element; Helitron-3_Ipa
Source:
Ilex paraguariensis
Organism:
Ilex paraguariensis
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex
[] Authors:
Aguilera,P.M. and Grabiele,M.
Title:
Helitron transposons from the yerba mate genome.
Journal:
Repbase Reports 23(4), 2294-2294 (2023)
Abstract:
De novo search via RepeatModeler from GCA_905181385.1; CDS predicted via Fgenesh and protein annotated via InterProScan. Consensus of 100 seqs >3000 nt; mean 86.11% identity to consensus. Additional features: from 1174 to 1603 is repeated the 5 prime region with 87.20% similarity; a stretch of 429 nt of the 5 prime region of Helitron-3_Ipa and Helitron-N8_Ipa share 73.90% similarity; flanked by A and T nucleotides embedded in min. 10 nt AT-rich regions.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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