Repbase Reports

2023, Volume 23, Issue 3
March 25, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 1946

SINE2-6b_Ipa

SINE2-6b_Ipa, a novel SINE retroposon from the Ilex paraguariensis genome.

Submitted:
01-Mar-2023
Accepted:
25-Mar-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-6b_Ipa
Source:
Ilex paraguariensis
Organism:
Ilex paraguariensis
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
Novel SINE retroposons from the yerba mate genome.
Journal:
Repbase Reports 23(3), 1946-1946 (2023)
Abstract:
De novo TE library from GCA_905181385.1. Consensus of 50 seqs; mean 83.09% identity to consensus. Additional features: tRNA related region (1-83); A box (14-24); B box (59-69); tRNA-unrelated region (84-107); poly A tail (108-117). SINE2-6a_Ipa and SINE2-6b_Ipa share 77.10% similarity.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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