Repbase Reports

2023, Volume 23, Issue 2
February 22, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 1307

SINE2-2_Mes

SINE2-2_Mes, a novel SINE retroposon from the mandioca genome.

Submitted:
01-Feb-2023
Accepted:
22-Feb-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-2_Mes
Source:
Manihot esculenta
Organism:
Manihot esculenta
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
Novel SINE retroposons from the mandioca genome.
Journal:
Repbase Reports 23(2), 1307-1307 (2023)
Abstract:
De novo TE library from GCF_001659605.2. Consensus of 3624 seqs >50 nt and poly A tail; mean 76.58% identity to consensus. Additional features: tRNA related region (1-81); A box (14-24); B box (57-67); tRNA-unrelated region (82-89); poly A tail (90-101); 337 copies in genes, 2 in CDS; no sequence similarity to other SINEs in Repbase.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2023 - Genetic Information Research Institute