Repbase Reports

2023, Volume 23, Issue 2
February 22, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 914

LINE1-N1_Mes

LINE1-N1_Mes, a novel non-LTR retrotransposon from the Manihot esculenta genome.

Submitted:
01-Feb-2023
Accepted:
22-Feb-2023
Key Words:
L1; Non-LTR Retrotransposon; Transposable Element; Nonautonomous; LINE1-N1_Mes
Source:
Manihot esculenta
Organism:
Manihot esculenta
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
[] Authors:
Aguilera,P.M. and Grabiele,M.
Title:
LINE retrotransposons from the mandioca genome.
Journal:
Repbase Reports 23(2), 914-914 (2023)
Abstract:
De novo TE library from GCF_001659605.2. Consensus of 25 seqs; mean 88.59% identity to consensus; some copies with visibles TSDs. Additional features: ORF1 (85-1224); ORF2 (1221-1919); poly A tail (1941-1949); 32 genomic copies >1000 nt. LINE1-2_Mes and LINE1-N1_Mes share >90.00% similarity at their terminal regions in addition to an internal block.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute