Repbase Reports

2023, Volume 23, Issue 2
February 22, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 916

LINE1-2_Mes

LINE1-2_Mes, a novel non-LTR retrotransposon from the Manihot esculenta genome.

Submitted:
01-Feb-2023
Accepted:
22-Feb-2023
Key Words:
L1; Non-LTR Retrotransposon; Transposable Element; autonomous; LINE1-2_Mes
Source:
Manihot esculenta
Organism:
Manihot esculenta
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
[] Authors:
Aguilera,P.M. and Grabiele,M.
Title:
LINE retrotransposons from the mandioca genome.
Journal:
Repbase Reports 23(2), 916-916 (2023)
Abstract:
De novo TE library from GCF_001659605.2. Consensus of 25 seqs; mean 83.22% identity to consensus; some copies with visibles TSDs. Additional features: ORF (156-4247); poly A tail (4269-4277); 51 genomic copies >1000 nt, 14 in genes, 9 in CDS. LINE1-2_Mes and LINE1-N1_Mes share >90.00% similarity at their terminal regions in addition to an internal block.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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