Repbase Reports

2023, Volume 23, Issue 1
January 25, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 633

SINE2-8c_Cch

SINE2-8c_Cch, a novel SINE retroposon from the Capsicum chinense genome.

Submitted:
27-Dec-2022
Accepted:
25-Jan-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-8c_Cch
Source:
Capsicum chinense
Organism:
Capsicum chinense
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
[] Authors:
Aguilera,P.M. and Grabiele,M.
Title:
SolS-XI, a novel SINE retroposon family from Solanaceae.
Journal:
Repbase Reports 23(1), 633-633 (2023)
Abstract:
Analyzed genome: GCA_002271895.2. Consensus of 50 seqs; mean 93.64% identity to consensus. Additional features: tRNA related region (1-81); A box (13-23); B box (57-67); tRNA-unrelated region (82-182); poly A tail (183-192); consensus sequences of SolS-XI subfamily 2 in Capsicum (SINE2-1b_Can, SINE2-2b_Cgl, SINE2-8c_Cch, SINE2-8c_Cba, SINE2-3_Sme) share 99.50% similarity; this family is absent from other Solanaceae genomes (Datura stramonium, Jaltomata sinuosa, Lycium barbarum, Nicotiana tabacum, Petunia axillaris, Solanum lycopersicum, Solanum tuberosum).
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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