Repbase Reports

2023, Volume 23, Issue 1
January 25, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 631

SINE2-8b2_Cch

SINE2-8b2_Cch, a novel SINE retroposon from the Capsicum chinense genome.

Submitted:
27-Dec-2022
Accepted:
25-Jan-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-8b2_Cch
Source:
Capsicum chinense
Organism:
Capsicum chinense
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
[] Authors:
Aguilera,P.M. and Grabiele,M.
Title:
SolS-XI, a novel SINE retroposon family from Solanaceae.
Journal:
Repbase Reports 23(1), 631-631 (2023)
Abstract:
Analyzed genome: GCA_002271895.2. Consensus of 50 seqs; mean 94.59% identity to consensus. Additional features: tRNA related region (1-81); A box (13-23); B box (57-67); tRNA-unrelated region (82-181); poly A tail (182-191); consensus sequences of SolS-XI subfamily 3 in Capsicum (SINE2-1c_Can, SINE2-2c_Cgl, SINE2-8b1_Cch, SINE2-8b2_Cch, SINE2-8b_Cba) share 98.30% similarity; this family is absent from other Solanaceae genomes (Datura stramonium, Jaltomata sinuosa, Lycium barbarum, Nicotiana tabacum, Petunia axillaris, Solanum lycopersicum, Solanum tuberosum).
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute