Repbase Reports

2023, Volume 23, Issue 1
January 25, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 602

SINE2-3a_Cch

SINE2-3a_Cch, a novel SINE retroposon from the Capsicum chinense genome.

Submitted:
28-Dec-2022
Accepted:
25-Jan-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-3a_Cch
Source:
Capsicum chinense
Organism:
Capsicum chinense
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
[] Authors:
Aguilera,P.M. and Grabiele,M.
Title:
SINE families Au and SolS-I to VII from the Capsicum chinense genome.
Journal:
Repbase Reports 23(1), 602-602 (2023)
Abstract:
Analyzed genome: GCA_002271895.2. Consensus of 50 seqs; mean 85.38% identity to consensus. Additional features: tRNA related region (1-80); A box (13-23); B box (56-66); tRNA-unrelated region (81-213); poly A tail (214-223); 96.60% similar to SINE2-3a_Cba (SolS-III). There exist three major subpopulations of SINE2-3_Cch (a, b and c) which consensus share 68.90% sequence similarity.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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