Repbase Reports

2023, Volume 23, Issue 1
January 25, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 621

SINE2-3_Sly

SINE2-3_Sly, a novel SINE retroposon from the Solanum lycopersicum genome.

Submitted:
27-Dec-2022
Accepted:
25-Jan-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-3_Sly
Source:
Solanum lycopersicum
Organism:
Solanum lycopersicum
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SolS-X, a novel SINE retroposon family from Solanaceae.
Journal:
Repbase Reports 23(1), 621-621 (2023)
Abstract:
Analyzed genome: GCF_000188115.4. Consensus of 80 seqs; mean 80.48% identity to consensus. Additional features: tRNA related region (1-82); A box (14-24); B box (58-68); tRNA-unrelated region (83-117); poly A tail (118-126); SolS-X consenus sequences in seven genera of Solanaceae, including SINE2-9_Cba, share 89.00% similarity.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2023 - Genetic Information Research Institute