Repbase Reports |
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| 2023, Volume 23, Issue 1 |
| January 25, 2023 |
| Copyright © 2001-2023 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 634 |
SINE2-2_Dst |
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SINE2-2_Dst, a novel SINE retroposon from the Datura stramonium genome. |
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Submitted: 27-Dec-2022 |
Accepted: 25-Jan-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-2_Dst |
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Source: Datura stramonium |
Organism: Datura stramonium |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Datureae; Datura |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SolS-XII, a novel SINE retroposon family from Solanaceae. |
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Journal: Repbase Reports 23(1), 634-634 (2023) |
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Abstract: Analyzed genome: GCA_018107945.1. There exist only 5 copies from 3 insertional events; consensus of 5 seqs; mean 92.11% identity to consensus. Additional features: tRNA related region (1-94); A box (14-24); B box (70-80); tRNA-unrelated region (95-180); poly A tail (181-191); 13 nt TSDs; SolS-XII consenus sequence is 70.83% similar to SolS-VIII and 66.85% similar to SolS-IX of Repbase; this family is absent from other Solanaceae genomes (Capsicum annuum var. annuum, Capsicum annuum var. glabriusculum, Capsicum baccatum, Capsicum chinense, Jaltomata sinuosa, Lycium barbarum, Nicotiana tabacum, Petunia axillaris, Solanum lycopersicum, Solanum melongena, Solanum tuberosum).
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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