Repbase Reports

2023, Volume 23, Issue 1
January 25, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 619

SINE2-2_Can

SINE2-2_Can, a novel SINE retroposon from the Capsicum annuum var. annuum genome.

Submitted:
27-Dec-2022
Accepted:
25-Jan-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-2_Can
Source:
Capsicum annuum
Organism:
Capsicum annuum
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SolS-X, a novel SINE retroposon family from Solanaceae.
Journal:
Repbase Reports 23(1), 619-619 (2023)
Abstract:
Analyzed genome: GCF_002878395.1. Consensus of 100 seqs; mean 81.53% identity to consensus. Additional features: tRNA related region (1-82); A box (14-24); B box (58-68); tRNA-unrelated region (83-116); poly A tail (117-125); SolS-X consenus sequences in seven genera of Solanaceae, including SINE2-9_Cba, share 89.00% similarity.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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