Repbase Reports

2023, Volume 23, Issue 1
January 25, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 617

SINE2-1_Nta

SINE2-1_Nta, a novel SINE retroposon from the Nicotiana tabacum genome.

Submitted:
27-Dec-2022
Accepted:
25-Jan-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-1_Nta
Source:
Nicotiana tabacum
Organism:
Nicotiana tabacum
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SolS-X, a novel SINE retroposon family from Solanaceae.
Journal:
Repbase Reports 23(1), 617-617 (2023)
Abstract:
Analyzed genome: GCF_000715135.1. Consensus of 100 seqs; mean 95.62% identity to consensus. Additional features: tRNA related region (1-83); A box (14-24); B box (59-69); tRNA-unrelated region (84-123); poly A tail (124-136); SolS-X consenus sequences in seven genera of Solanaceae, including SINE2-9_Cba, share 89.00% similarity.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2023 - Genetic Information Research Institute