Repbase Reports

2023, Volume 23, Issue 1
January 25, 2023
Copyright © 2001-2023 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 590

Mariner-N2a1_Cch

Mariner-N2a1_Cch, a novel transposon from the Capsicum chinense genome.

Submitted:
28-Dec-2022
Accepted:
25-Jan-2023
Key Words:
Mariner/Tc1; DNA transposon; Transposable Element; Nonautonomous; Mariner-N2a1_Cch
Source:
Capsicum chinense
Organism:
Capsicum chinense
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
Short transposons from the Capsicum chinense genome.
Journal:
Repbase Reports 23(1), 590-590 (2023)
Abstract:
Analyzed genome: GCA_002271895.2. Consensus of 22 seqs; mean 90.26% identity to consensus. Additional features: 32 nt TIRs 85.90% identity; TA TSDs; 96.40% similar to Mariner-N2a_Cba. There exist four major subpopulations of Mariner-N2_Cch (a1, a2, b and c) which consensus share 67.90% sequence similarity.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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