Repbase Reports

2022, Volume 22, Issue 5
May 24, 2022
Copyright © 2001-2022 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 3324

SINE2-5_Ipa

SINE2-5_Ipa, a novel SINE retroposon from the Ilex paraguariensis genome.

Submitted:
04-May-2022
Accepted:
24-May-2022
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-5_Ipa
Source:
Ilex paraguariensis
Organism:
Ilex paraguariensis
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE2-5_Ipa, a novel SINE retroposon from the Ilex paraguariensis genome.
Journal:
Repbase Reports 22(5), 3324-3324 (2022)
Abstract:
De novo TE library from GCA_905181385.1. Consensus of 170 seqs with both termini; mean 75.32% identity to consensus. Additional features: tRNA related region (1-81); A box (13-23); B box (57-67); tRNA- unrelated region (82-192); poly A tail (193-202); no sequence similarity to other SINEs in Repbase.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2022 - Genetic Information Research Institute