Repbase Reports

2022, Volume 22, Issue 5
May 24, 2022
Copyright © 2001-2022 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 3323

SINE2-4_Ipa

SINE2-4_Ipa, a novel SINE retroposon from the Ilex paraguariensis genome.

Submitted:
04-May-2022
Accepted:
24-May-2022
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-4_Ipa
Source:
Ilex paraguariensis
Organism:
Ilex paraguariensis
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex
[] Authors:
Aguilera,P.M. and Grabiele,M.
Title:
SINE2-4_Ipa, a novel SINE retroposon from the Ilex paraguariensis genome.
Journal:
Repbase Reports 22(5), 3323-3323 (2022)
Abstract:
De novo TE library from GCA_905181385.1. Consensus of 36 seqs with both termini, 31 with TSDs; mean 83.54% identity to consensus. Additional features: tRNA related region (1-93); A box (14-24); B box (69-79); tRNA-unrelated region (94-201); poly A tail (202-215); 9 to 19 nt in length TSDs (mean 15 nt), 70% AT-rich seqs; 63.6% similar to SINE2-2b_Csi of tea.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2022 - Genetic Information Research Institute