Repbase Reports

2021, Volume 21, Issue 8
August 24, 2021
Copyright © 2001-2021 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4615

SINE2-7_Csi

SINE2-7_Csi, a novel SINE retroposon from the tea genome.

Submitted:
15-Aug-2021
Accepted:
24-Aug-2021
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-7_Csi
Source:
Camellia sinensis
Organism:
Camellia sinensis
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
Retroposons from the tea genome (Camellia sinensis).
Journal:
Repbase Reports 21(8), 4615-4615 (2021)
Abstract:
1..82 /feature="tRNA-related region" 14..24 /feature="A box" 58..68 /feature="B box" 83..183 /feature="tRNA-unrelated region" 184..199 /feature="tail" Analyzed genome of tea: GCA_013676235.1. This consensus is generated from the overall 6 copies of this element in tea, resultant from 6 insertional events, with mean 97% identity to consensus. Solely 4 copies are entire length, another is 6 nt truncated at 5 and the last holds the entire tRNA-related region truncated. All the copies has TSDs (17, 15, 14, 10 or 8 nts), 48.4% A-rich regions, and 1 is at intron of gene HYC85_003365. Its consensus is 70.4% similar to SINE2-1a_Can.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2021 - Genetic Information Research Institute