Repbase Reports

2021, Volume 21, Issue 8
August 24, 2021
Copyright © 2001-2021 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4624

SINE2-5c_Csi

SINE2-5c_Csi, a novel SINE retroposon from the tea genome.

Submitted:
15-Aug-2021
Accepted:
24-Aug-2021
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-5c_Csi
Source:
Camellia sinensis
Organism:
Camellia sinensis
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
Retroposons from the tea genome (Camellia sinensis).
Journal:
Repbase Reports 21(8), 4624-4624 (2021)
Abstract:
1..82 /feature="tRNA-related region" 12..22 /feature="A box" 55..65 /feature="B box" 83..147 /feature="tRNA-unrelated region" 148..158 /feature="tail" Analyzed genome of tea: GCA_013676235.1. This consensus is generated from 15 copies within duplicated genomic regions (1 insertional event), with mean 96.3% identity to consensus and 13 nt TSDs (TTGAGTAAAACAG/TTGAGTAAAACAG). There exist three major subpopulations of SINE2-5_Csi (a, b and c) which consensus share 68.7% sequence similarity.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2021 - Genetic Information Research Institute