Repbase Reports

2021, Volume 21, Issue 8
August 24, 2021
Copyright © 2001-2021 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4632

SINE2-2_Ipa

SINE2-2_Ipa, a novel SINE retroposon from the yerba mate genome.

Submitted:
14-Aug-2021
Accepted:
24-Aug-2021
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-2_Ipa
Source:
Ilex paraguariensis
Organism:
Ilex paraguariensis
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex
[] Authors:
Aguilera,P.M. and Grabiele,M.
Title:
Retroposons from the yerba mate genome (Ilex paraguariensis).
Journal:
Repbase Reports 21(8), 4632-4632 (2021)
Abstract:
1..82 /feature="tRNA-related region" 13..24 /feature="A box" 58..68 /feature="B box" 83..171 /feature="tRNA-unrelated region" 172..179 /feature="tail" Analyzed genome of yerba mate: GCA_905181385.1. This consensus is generated from the overall 13 copies of this element in yerba mate, resultant from 7 insertional events, with mean 89.7% identity to consensus. Solely 6 copies are entire length and 9 has TSDs of 6, 8, 13 or 14 nts. Its consensus is 68.9% similar to SINE2-5_Car.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2021 - Genetic Information Research Institute