Repbase Reports

2021, Volume 21, Issue 8
August 24, 2021
Copyright © 2001-2021 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4634

LTR-4a_Ipa

LTR-4a_Ipa, a short LTR element from the yerba mate genome.

Submitted:
14-Aug-2021
Accepted:
24-Aug-2021
Key Words:
LTR Retrotransposon; Transposable Element; Nonautonomous; LTR-4a_Ipa
Source:
Ilex paraguariensis
Organism:
Ilex paraguariensis
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex
[] Authors:
Aguilera,P.M. and Grabiele,M.
Title:
Retroposons from the yerba mate genome (Ilex paraguariensis).
Journal:
Repbase Reports 21(8), 4634-4634 (2021)
Abstract:
1..178 /feature="LTR" 304..481 /feature="LTR" Analyzed genome of yerba mate: GCA_905181385.1. This consensus is generated from 120 entire length sequences with mean 90.4% identity to consensus. This element arranges single (LTR-I-LTR) or in tandem of I-LTR structures, 3, 4, 5 and up to 15 (scaffold CAJIXV010001237) repetitions, flanked by 5 nt TSDs. There exist two major subpopulations of LTR-4_Ipa (a and b) which consensus share 73.1% sequence similarity.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2021 - Genetic Information Research Institute