Repbase Reports

2021, Volume 21, Issue 8
August 24, 2021
Copyright © 2001-2021 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4619

LTR-1_Csi

LTR-1_Csi, a short LTR element from the tea genome.

Submitted:
15-Aug-2021
Accepted:
24-Aug-2021
Key Words:
LTR Retrotransposon; Transposable Element; Nonautonomous; LTR-1_Csi
Source:
Camellia sinensis
Organism:
Camellia sinensis
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
Retroposons from the tea genome (Camellia sinensis).
Journal:
Repbase Reports 21(8), 4619-4619 (2021)
Abstract:
1..86 /feature="LTR" 206..291 /feature="LTR" Analyzed genome of tea: GCA_013676235.1. This consensus is generated from 40 entire length sequences with mean 82.7% identity to consensus. This element has 5 nt TSDs and its consensus is 81.4% similar to LTR-1_Can and 69.4% to LTR-5_Ipa.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2021 - Genetic Information Research Institute