Repbase Reports

2021, Volume 21, Issue 11
November 25, 2021
Copyright © 2001-2021 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 6576

hAT-2a_Csi

hAT-2a_Csi, a short DNA transposon from the tea genome.

Submitted:
26-Oct-2021
Accepted:
25-Nov-2021
Key Words:
hAT; DNA transposon; Transposable Element; Nonautonomous; hAT-2a_Csi
Source:
Camellia sinensis
Organism:
Camellia sinensis
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
Transposons from the tea genome (Camellia sinensis).
Journal:
Repbase Reports 21(11), 6576-6576 (2021)
Abstract:
Analyzed genome of tea: GCA_013676235.1. Consensus of 65 entire length seqs (TIR to TIR); mean 96.8% identity to consensus. Additional features: 11 nt TIRs; 8 nt TSDs; one copy carries an entire LTR-1_Csi-LTR element (solo-1070 nt) flanked by AGTTG TSDs integrated at position 321 of the consensus sequence; four major subpopulations of hAT-2_Csi occur (a to d), which consensus share 79.6% similarity.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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