Repbase Reports

2021, Volume 21, Issue 10
October 24, 2021
Copyright © 2001-2021 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 5416

Harbinger-1a_Car

Harbinger-1a_Car member of the family.

Submitted:
22-Sep-2021
Accepted:
24-Oct-2021
Key Words:
Harbinger; DNA transposon; Transposable Element; Nonautonomous; Harbinger-1a_Car
Source:
Coffea arabica
Organism:
Coffea arabica
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
Harbinger-1_Car, a family of Harbinger transposons from the Coffea arabica genome.
Journal:
Repbase Reports 21(10), 5416-5416 (2021)
Abstract:
Analyzed genome of coffea: GCA_003713225.1 v1.0. Consensus of 517 total genomic TIR to TIR length copies; mean 96.3% identity to consensus. Additional features: TTA/TAA mainly TSDs; 16 nt TIRs; two pairs of subterminal inverted repeats, 12 and 14 nt in length respectively; all copies carry a full length Dorothy SINE, with poly A tail and both TSDs (GAATATACTA/GAACATACTA), at position 489 to 578 of the consensus.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2021 - Genetic Information Research Institute