Repbase Reports

2020, Volume 20, Issue 9
September 28, 2020
Copyright © 2001-2020 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 2486

Ngaro-1_MiSa

DIRS retrotransposon - consensus.

Submitted:
25-Nov-2019
Accepted:
28-Sep-2020
Key Words:
DIRS; LTR Retrotransposon; Transposable Element; Ngaro-1_MiSa
Source:
Microbotryum saponariae
Organism:
Microbotryum saponariae
Taxonomy:
Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; Microbotryomycetes; Microbotryales; Microbotryaceae; Microbotryum
[] Authors:
Bao,W.
Title:
DIRS retrotransposons from the Microbotryum saponariae genome.
Journal:
Repbase Reports 20(9), 2486-2486 (2020)
Abstract:
~99% identical to the consensus. The peculiarity about Ngaro-1_MiSa is that it does not show split direct repeat, nor TIRs, nor TSDs, but contains the RTase, RNase H, and YR recombinase. RT and RNase seems not to be coded in a single ORF, implying either it is a recently decaded autonomous TE, or translation shift occurs. Note: For some individual DIRS families, individual copies with split direct repeat, or no, are both observed.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2020 - Genetic Information Research Institute