Repbase Reports

2019, Volume 19, Issue 11
November 30, 2019
Copyright © 2001-2019 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 2221

DNA9-1_LVa

DNA transposons, consensus.

Submitted:
31-Oct-2019
Accepted:
30-Nov-2019
Key Words:
DNA transposon; Transposable Element; DNA9-1_LVa
Source:
Litopenaeus vannamei
Organism:
Litopenaeus vannamei
Taxonomy:
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Dendrobranchiata; Penaeoidea; Penaeidae; Litopenaeus
[] Authors:
Bao,W.
Title:
DNA transposons from the shrimp genome.
Journal:
Repbase Reports 19(11), 2221-2221 (2019)
Abstract:
~90% identical to the consensus. TIRs are ~11-bp long. TSDs are 9-bp long. The contained (TTAGG)n microsatellite could be very long in some cases. The Shrimp Epigenome (shrimpENCODE) Project is funded by the FUCOBI Foundation of Ecuador, Environmental Genomics Inc., MA, USA, and USDA-NRSP-8.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Alcivar-Warren,A., Bogden,R., Tao,Q., Iyer,S., Mikhaylenko,G., Wittendorp,J., Mraz,A., Hart,E. and Hatas,E.
    et al
    The shrimp epigenome (shrimpENCODE) project: efforts to sequence the genome of specific pathogen-free (SPF) Litopenaeus vannamei from the United States.
    unpublished

© 2001-2019 - Genetic Information Research Institute