Repbase Reports

2018, Volume 18, Issue 12
December 24, 2018
Copyright © 2001-2018 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 1352

DNAV-1a_LVa

A integrated DNA virus sequences- consensus.

Submitted:
26-Jan-2017
Accepted:
24-Dec-2018
Key Words:
DNA Virus; Integrated Virus; DNAV-1_LVa; DNAV-1a_LVa; WSSV
Source:
Litopenaeus vannamei
Organism:
Litopenaeus vannamei
Taxonomy:
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Dendrobranchiata; Penaeoidea; Penaeidae; Litopenaeus
[] Authors:
Bao,W.
Title:
DNA viruses from the shrimp genome.
Journal:
Repbase Reports 18(12), 1352-1352 (2018)
Abstract:
This preliminary consensus of DNAV-1_LVa is rebuilt from ~6 "raw" sequence derived from Pac-Bio and squence errors could be frequent in variable regions. It is distantly similar to other White spot syndrome virus (WSSV). Termini are not exactly certain. DNAV-1_LVa insertes preferentially or specifically into 5-bp TTAGG satellite, which is the putative telomere sequence in shrimp. The full length of DNAV-1_LVa is ~280-kb. DNAV-1a_LVa here represent the first segment, and the following respective segments are assigned with sequential names (DNAV-1b_LVa, DNAV-1c_LVa, DNAV-1d_LVa, DNAV-1d_LVa, DNAV-1f_LVa, and DNAV-1g_LVa), and are enlisted as seperate entries in Repbase.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Alcivar-Warren,A., Bogden,R., Tao,Q., Iyer,S., Mikhaylenko,G., Wittendorp,J., Mraz,A., Hart,E. and Hatas,E.
    et al
    The shrimp epigenome (shrimpENCODE) project: efforts to sequence the genome of specific pathogen-free (SPF) Litopenaeus vannamei from the United States.
    unpublished

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