Repbase Reports

2017, Volume 17, Issue 4
April 28, 2017
Copyright © 2001-2017 - Genetic Information Research Institute, Mountain View, California
ISSN# 1534-830X
Page 425

Mariner-3_OT

DNA transposon, consensus.

Submitted:
24-Sep-2014
Accepted:
28-Apr-2017
Key Words:
Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_OT
Source:
Oxytricha trifallax
Organism:
Oxytricha trifallax
Taxonomy:
Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Spirotrichea; Stichotrichia; Sporadotrichida; Oxytrichidae; Oxytrichinae; Oxytricha
[2] Authors:
Bao,W.
Title:
DNA transposons from the Oxytricha trifallax micronuclear genome.
Journal:
Repbase Reports 17(4), 425-425 (2017)
Abstract:
>98% identical to the consensus. TIRs are 22-bp long. Pos 5126 to pos 5812 contains decayed coding sequences for a Mariner Tpase, with 62% identical to Mariner-1_OT_1p. It also potentially encode other uncharacterized proteins.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Chen,X., Bracht,J.R., Goldman,A.D., Dolzhenko,E., Clay,D.M., Swart,E.C., Perlman,D.H., Doak,T.G., Stuart,A. et al.
    The Architecture of a Scrambled Genome Reveals Massive Levels of Genomic Rearrangement during Development.
    Cell 158(5), 1187-1198 (2014)

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