Repbase Reports

2016, Volume 16, Issue 5
May 31, 2016
Copyright © 2001-2018 - Genetic Information Research Institute, Mountain View, California
ISSN# 1534-830X
Page 1005

Copia-39_Sit-I

LTR retrotransposon from the foxtail millet genome: internal portion.

Submitted:
03-Jun-2012
Accepted:
31-May-2016
Key Words:
Copia; LTR Retrotransposon; Transposable Element; Copia-39_Sit_; Copia-39_Sit-LTR; Copia-39_Sit-I
Source:
Setaria italica
Organism:
Setaria italica
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Paniceae; Setaria
[2] Authors:
Jurka,J.
Title:
LTR retrotransposons from the foxtail millet genome.
Journal:
Repbase Reports 16(5), 1005-1005 (2016)
Abstract:
Positions [3217-3720] - Integrase core 'AGACT' target site duplication LTRs are 98% similar to each other.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Zhang,G., Liu,X., Quan,Z., Cheng,S., Xu,X., Pan,S., Xie,M., Zeng,P., Yue,Z., Wang,W., Tao,Y., Bian,C. et al.
    Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential.
    Nat Biotechnol 30(6), 549-554 (2012)

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