Repbase Reports |
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| 2015, Volume 15, Issue 5 |
| May 31, 2015 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 1847 |
TrepLINE1 |
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A LINE retrotransposon family from Trifolium repens. |
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Submitted: 13-Apr-2015 |
Accepted: 31-May-2015 |
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Key Words: L1; Non-LTR Retrotransposon; Transposable Element; Nonautonomous; reverse transciptase; LINE; clover; TrepLINE1 |
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Source: Trifolium repens |
Organism: Trifolium repens |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium |
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| [1] |
Authors: Thomas,M.C. and Laten,H.M. |
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Title: PCR amplification of transposable element families from clover. |
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Journal: Repbase Reports 15(5), 1847-1847 (2015) |
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Abstract: Consensus sequence of a LINE element from white clover generated by direct sequencing of PCR-amplified genomic DNA. Truncated at 5' and 3' ends. Contains two ORFs. ORF 1 encodes pfam14111, domain of unknown function (DUF4283), and zinc knuckle (pfam14392). ORF 2 encodes L1-EN (cd09076), RT_nLTR (cd01650), and zf-RVT (pfam13966).
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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