Repbase Reports

2014, Volume 14, Issue 9
September 30, 2014
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 2368

DNA-6_RC

A non-autonomous DNA transposon family from the castor oil plant genome.

Submitted:
22-Mar-2011
Accepted:
30-Sep-2014
Key Words:
DNA transposon; Transposable Element; Nonautonomous; MuDR; DNA-6_RC
Source:
Ricinus communis
Organism:
Ricinus communis
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
[2] Authors:
Kojima,K.K. and Jurka,J.
Title:
DNA transposons from the castor oil plant genome.
Journal:
Repbase Reports 14(9), 2368-2368 (2014)
Abstract:
This consensus is generated from 30 sequences with 86-92% identity. ~9-bp TSDs are highly AT-rich. Both termini are ~480-bp imperfect TIRs. Terminal sequences GGG..CCC and TSD features support that it is a non-autonomous MuDR, although no sequence similarity is seen.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Chan,A.P., Crabtree,J., Zhao,Q., Lorenzi,H., Orvis,J., Puiu,D., Melake-Berhan,A., Jones,K.M., Redman,J. et al.
    Draft genome sequence of the oilseed species Ricinus communis.
    Nat Biotechnol 28(9), 951-956 (2010)

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