Repbase Reports
2014, Volume 14, Issue 7
July 31, 2014
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 1876

Nimb-1_LG

A family of Nimb non-LTR retrotransposons from Lottia gigantea - consensus sequence.

Submitted:
22-Mar-2011 		Accepted:
31-Jul-2014
Key Words:
Nimb; Non-LTR Retrotransposon; Transposable Element; I group; Nimb-1_LG
Source:
Lottia gigantea 		Organism:
Lottia gigantea 		Taxonomy:
Eukaryota; Metazoa; Lophotrochozoa; Mollusca; Gastropoda; Patellogastropoda; Lottioidea; Lottiidae; Lottia
[2] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
A recently active family of Nimb non-LTR retrotransposons from the owl limpet.
Journal:
Repbase Reports 14(7), 1876-1876 (2014)
Abstract:
The consensus sequence was derived from multiple alignment of ~100 copies that are less than 2% diverged from the consensus. The 3'-terminus is composed of the (TACC)n microsatellite. The ORF2-encoded protein, composed of the standard AP endonuclease, reverse transcriptase and RNase H domains, does not have the starting Met; therefore, its translation includes ribosomal frameshift.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Simakov,O., Marletaz,F., Cho,S.J., Edsinger-Gonzales,E., Havlak,P., Hellsten,U., Kuo,D.H., Larsson,T. et al.
    Insights into bilaterian evolution from three spiralian genomes.
    Nature 493(7433), 526-531 (2013)

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