Repbase Reports

2012, Volume 12, Issue 10
October 31, 2012
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 1996

Mutsu-1_SK

A Tx1 non-LTR retrotransposon from Saccoglossus kowalevskii - consensus.

Submitted:
22-Mar-2011
Accepted:
31-Oct-2012
Key Words:
Tx1; Non-LTR Retrotransposon; Transposable Element; Mutsu-1_SK
Source:
Saccoglossus kowalevskii
Organism:
Saccoglossus kowalevskii
Taxonomy:
Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae; Saccoglossus
[1] Authors:
Kojima,K.K. and Jurka,J.
Title:
5S ribosomal RNA gene-specific Tx1 non-LTR retrotransposons from the acorn worm.
Journal:
Repbase Reports 12(10), 1996-1996 (2012)
Abstract:
This consensus is generated from 5 sequences with >97% identity. All copies are followed by 5S ribosomal RNA genes, started with CAGTTCTCGTCCGATCACTG. The 5' flanking sequence is a specer of 5S gene tandem array. Thus this family is likely to be inserted into 5S ribosomal RNA genes. The insertion sites of this family are close to or the same as those of Mutsu elements in zebrafish, although the 5S gene sequences of two species are diverged. This sequence was derived from sequence data generated by Human Genome Sequencing Center at Baylor College of Medicine: the acorn worm genome.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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