Repbase Reports

2012, Volume 12, Issue 1
January 31, 2012
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 119

SINE2-1_PD

SINE element from the Phaenix dactylifera genome.

Submitted:
06-Sep-2011
Accepted:
31-Jan-2012
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-1_PD
Source:
Phoenix dactylifera
Organism:
Phoenix dactylifera
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
[2] Authors:
Kojima,K.K. and Jurka,J.
Title:
SINEs from the Phoenix dactylifera genome.
Journal:
Repbase Reports 12(1), 119-119 (2012)
Abstract:
This consensus is generated from 20 sequences with ~82% identity. It is similar to SINE2-1_JC, SINE2-2_STu, SINE2-1_TAe, SINE-5_Mad and so on. These elements were likely transposed by RTE elements, since they show similarity to the 3' UTR of RTE-1_STu.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Al-Dous,E.K., George,B., Al-Mahmoud,M.E., Al-Jaber,M.Y., Wang,H., Salameh,Y.M., Al-Azwani,E.K., Chaluvadi,S. et al.
    De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera).
    Nat Biotechnol 29(6), 521-527 (2011)

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