Repbase Reports

2011, Volume 11, Issue 6
June 30, 2011
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 1961

Tx1-1_DPu

Tx1-type non-LTR retrotransposon from Daphnia - consensus sequence.

Submitted:
22-Mar-2011
Accepted:
30-Jun-2011
Key Words:
Tx1; Non-LTR Retrotransposon; Transposable Element; Tx1-1_DPu
Source:
Daphnia pulex
Organism:
Daphnia pulex
Taxonomy:
Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
[2] Authors:
Jurka,J. and Kojima,K.K.
Title:
Non-LTR retrotransposons from the common water flea.
Journal:
Repbase Reports 11(6), 1961-1961 (2011)
Abstract:
>98% identical to consensus. This family is followed by TRNA-ASN (38-75) and tandem array of tRNAs. Considering its characterization as a family of Tx1 clade, it is likely a non-LTR retrotransposon specifically inserted into tRNA-Asn.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Colbourne,J.K., Pfrender,M.E., Gilbert,D., Thomas,W.K., Tucker,A., Oakley,T.H., Tokishita,S., Aerts,A. et al.
    The ecoresponsive genome of Daphnia pulex.
    Science 331(6017), 555-561 (2011)

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