Repbase Reports

2010, Volume 10, Issue 9
September 30, 2010
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 1219

Harbinger2-1_TMe

A family of autonomous Harbinger transposons - a consensus.

Submitted:
13-Aug-2010
Accepted:
30-Sep-2010
Key Words:
Harbinger; DNA transposon; Transposable Element; Interspersed repeat; Harbinger2; Harbinger2-1_TMe
Source:
Tuber melanosporum
Organism:
Tuber melanosporum
Taxonomy:
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomyceta; Pezizomycotina; Pezizomycetes; Pezizales; Tuberaceae; Tuber
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Harbinger2, a novel clade of Harbinger transposons in protozoan, fungi, choanoflagellate, and metazoans.
Journal:
Repbase Reports 10(9), 1219-1219 (2010)
Abstract:
Harbinger2-1_TMe belongs to a novel clade, Harbinger2, of Harbinger DNA transposons. This clade includes transposons present in protozoan (brown alga), fungi, choanoflagellate, and metazoans. Harbinger2-1_TMe is a consensus sequence of a family of autonomous Harbinger transposons that were active in the Tuber melanosporum genome recently. The consensus was derived from 6 copies ~98% identical to it. The genome contains only three full-size copies of Harbinger2-1_TMe; ther are flanked by the TWA target site duplications. This transposon codes for the 399-aa TPase (2 exons).
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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