Repbase Reports

2010, Volume 10, Issue 9
September 30, 2010
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 1216

Harbinger2-1_MBr

A family of autonomous Harbinger transposons - an incomplete consensus.

Submitted:
13-Aug-2010
Accepted:
30-Sep-2010
Key Words:
Harbinger; DNA transposon; Transposable Element; Interspersed repeat; Harbinger2; Harbinger2-1_MBr
Source:
Monosiga brevicollis
Organism:
Monosiga brevicollis
Taxonomy:
Eukaryota; Choanoflagellida; Codonosigidae; Monosiga
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Harbinger2, a novel clade of Harbinger transposons in protozoan, fungi, choanoflagellate, and metazoans.
Journal:
Repbase Reports 10(9), 1216-1216 (2010)
Abstract:
Harbinger2-1_MBr belongs to a novel clade, Harbinger2, of Harbinger DNA transposons. This clade includes transposons present in protozoan (brown alga), fungi, choanoflagellate, and metazoans. Harbinger2-1_MBr is a consensus sequence of a family of autonomous Harbinger transposons that were active in the Nematostella vectensis genome very recently. This transposon is probably still active. The assembled genome contains only two copies of this transposon, they are >99% identical to each other. The consensus is incomplete due to the insufficient sequence data: its 5' and 3' termini are uncertain. The monosiga genome contains, as minimum, two other families of Harbinger2.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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