Repbase Reports |
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| 2010, Volume 10, Issue 9 |
| September 30, 2010 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 1211 |
Gypsy172-LTR_Dr |
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A long terminal repeat of the Gypsy-172_DR LTR retrotransposon - a consensus sequence. |
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Submitted: 24-Oct-2009 |
Accepted: 30-Sep-2010 |
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Key Words: Gypsy; LTR Retrotransposon; Transposable Element; endogenous retrovirus; Interspersed repeat; reverse transcriptase; gag; Gypsy superfamily; integrase; Gypsy-172-I_DR; Gypsy-172-LTR_DR; Gypsy-172_DR; Gypsy172-I_Dr; Gypsy172-LTR_Dr |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
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Authors: Dib,M.R. and Naveira,H.F. |
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Title: Gypsy-172_DR, a family of LTR retrotransposons from zebrafish. |
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Journal: Repbase Reports 10(9), 1211-1211 (2010) |
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Abstract: Gypsy-172-LTR_DR is a long terminal repeat of the Gypsy-172_DR retrotransposon that belongs to the Gypsy superfamily. Its internal portion (Gypsy-172-I_DR) contains three ORFs encoding the 157-aa Gypsy-172_DR1p gag (pos. 125-595) and 458-aa Gypsy-172_DR2p pol proteins (pos. 709-2083) composed of the protease, reverse transcriptase, and the 736-aa Gypsy-172_DR3p pol proteins (pos.2004-4211) composed of the integrase domain. Some insertions fairly recent, according to the hight identity between their flanking LTRs. Consensus obtained after the alignment of at least three independent insertions.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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