Repbase Reports

2010, Volume 10, Issue 9
September 30, 2010
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 1211

Gypsy172-LTR_Dr

A long terminal repeat of the Gypsy-172_DR LTR retrotransposon - a consensus sequence.

Submitted:
24-Oct-2009
Accepted:
30-Sep-2010
Key Words:
Gypsy; LTR Retrotransposon; Transposable Element; endogenous retrovirus; Interspersed repeat; reverse transcriptase; gag; Gypsy superfamily; integrase; Gypsy-172-I_DR; Gypsy-172-LTR_DR; Gypsy-172_DR; Gypsy172-I_Dr; Gypsy172-LTR_Dr
Source:
Danio rerio
Organism:
Danio rerio
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
[1] Authors:
Dib,M.R. and Naveira,H.F.
Title:
Gypsy-172_DR, a family of LTR retrotransposons from zebrafish.
Journal:
Repbase Reports 10(9), 1211-1211 (2010)
Abstract:
Gypsy-172-LTR_DR is a long terminal repeat of the Gypsy-172_DR retrotransposon that belongs to the Gypsy superfamily. Its internal portion (Gypsy-172-I_DR) contains three ORFs encoding the 157-aa Gypsy-172_DR1p gag (pos. 125-595) and 458-aa Gypsy-172_DR2p pol proteins (pos. 709-2083) composed of the protease, reverse transcriptase, and the 736-aa Gypsy-172_DR3p pol proteins (pos.2004-4211) composed of the integrase domain. Some insertions fairly recent, according to the hight identity between their flanking LTRs. Consensus obtained after the alignment of at least three independent insertions.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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