Repbase Reports |
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| 2010, Volume 10, Issue 9 |
| September 30, 2010 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 1210 |
Gypsy172-I_Dr |
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An internal portion of a Gypsy-172_DR LTR retrotransposon - a consensus sequence. |
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Submitted: 23-Jul-2009 |
Accepted: 30-Sep-2010 |
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Key Words: Gypsy; LTR Retrotransposon; Transposable Element; endogenous retrovirus; Interspersed repeat; reverse transcriptase; gag; Gypsy superfamily; integrase; internal portion; Gypsy-172-I_DR; Gypsy-172-LTR_DR; Gypsy-172_DR; Gypsy172-I_Dr |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio |
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Authors: Dib,M.R. and Naveira,H.F. |
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Title: Gypsy-172_DR, a family of LTR retrotransposons from zebrafish. |
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Journal: Repbase Reports 10(9), 1210-1210 (2010) |
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Abstract: Gypsy-172-I_DR is an internal portion of the Gypsy-172_DR LTR retrotransposon that belongs to the Gypsy superfamily. Its long terminal repeat is deposited in Repbase as Gypsy-172-LTR_DR. Gypsy-172_DR is characterized by 4-bp target site duplications. Gypsy-172-I_DR is an internal portion of the Gypsy-172_DR LTR retrotransposon that belongs to the Gypsy superfamily. Its long terminal repeat is deposited in Repbase as Gypsy-172-LTR_DR. Gypsy-172_DR is characterized by 4-bp target site duplications.The internal portion contains three ORFs encoding the 157-aa Gypsy-172_DR1p gag (pos. 125-595) and 458-aa Gypsy-172_DR2p pol proteins (pos. 709-2083) composed of the protease, reverse transcriptase, and the 736-aa Gypsy-172_DR3p pol proteins (pos.2004-4211) composed of the integrase domain. Some insertions fairly recent, according to the hight identity between their flanking LTRs. Consensus obtained after the alignment of at least three independent insertions bearing at least 85% homology over at least 1000bp.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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